Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13j11
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    27   0.64 
SPBC216.06c |swi1||replication fork protection complex subunit S...    25   3.4  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    24   5.9  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    24   5.9  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    23   7.9  

>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 27.1 bits (57), Expect = 0.64
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = +2

Query: 50  IDHVTAHCTICLLKTTMFQYQGSDSYNCTHYSKRYYAIDSVLACLTFFFHRIYSFSKGQS 229
           I  +  +C++ L  + MF   GSD+Y      + + AI      + F+  R+Y       
Sbjct: 706 ITQIYLNCSLDLRDSWMFHENGSDTYRSAQLQETFLAI-----LIRFYHIRLYGKKCKSL 760

Query: 230 EHFC 241
             FC
Sbjct: 761 YQFC 764


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -3

Query: 220 FGERVDPMEEKRQARENTINSVITF---GIMCAIIRI 119
           F E VD +   RQA+ N  NS++++    ++ AI+ +
Sbjct: 110 FRENVDVLYNLRQAQSNYKNSILSYKKGSVLSAILAV 146


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 193 LPSDLLFLQRAI*TFLRLTNLLETIIFQFYLYCIRE 300
           LPS LL+ ++ +  F  +TNL E  +++  L  +++
Sbjct: 28  LPSTLLYDEKGLRLFDEITNLKEYYLYESELDILKK 63


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 131 CTHYSKRYYAIDSVLACLTFFFHRIYSFSKGQS 229
           C    + YYAID+++A   F  +RI   SKG +
Sbjct: 473 CMETMEGYYAIDNLIAKCEFLGNRI---SKGMA 502


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 247  TNLLETIIFQFYLYCI 294
            TNLL+  +FQ YL C+
Sbjct: 1175 TNLLDLPMFQVYLGCV 1190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,151,417
Number of Sequences: 5004
Number of extensions: 19628
Number of successful extensions: 48
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)