Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13j10
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1512 + 37881055-37881229,37881388-37881444,37881537-378816... 31 1.1
06_03_0565 - 22308074-22309510,22309670-22309723 29 2.6
07_03_0815 + 21707061-21707112,21707394-21708286,21709289-217094... 29 3.4
10_07_0135 + 13308839-13308899,13310146-13310495,13310574-133107... 29 4.5
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 29 4.5
07_01_0026 + 190568-190829,192475-194534,194620-195168 28 7.8
05_01_0086 + 569137-569190,569285-569336,570026-570057,570510-57... 28 7.8
04_04_0408 + 24987218-24987760,24988406-24988534,24988617-249889... 28 7.8
03_03_0035 + 13977150-13979228,13979351-13979824 28 7.8
>01_06_1512 +
37881055-37881229,37881388-37881444,37881537-37881627,
37881759-37881919,37882002-37882129,37882215-37882352,
37882665-37882757,37882858-37882975,37883064-37883194
Length = 363
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -1
Query: 317 GGATSGFVFSAWMKKGIIAVPAAVVLGAIAVVKKTGI 207
GG G +F+A +K ++AV ++ +G +VKK G+
Sbjct: 12 GGGGGGDLFAANLKGSLLAVASSAFIGVSFIVKKKGL 48
>06_03_0565 - 22308074-22309510,22309670-22309723
Length = 496
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 166 VDCAASGKKIQPSSMPVFFTTAIAPSTTAAGTAIIPFFIQALNTK 300
+D G K+ P+S+PVF T I IIPF +A T+
Sbjct: 285 MDTRVGGLKVPPASLPVFPVTFIILLAPVYDHIIIPFARRATGTE 329
>07_03_0815 +
21707061-21707112,21707394-21708286,21709289-21709459,
21709880-21710143,21710404-21710421
Length = 465
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +3
Query: 243 YHRGRHRDNPLFHPSTKHKTRCGTTQEVIEFIVFPTNILGNVGSECEG 386
Y GRHR + F+PS + + +E +VF LG V EG
Sbjct: 279 YPYGRHRQHTKFNPSCDRLLKTFSRIRCLEMLVFIEPHLGGVNPLMEG 326
>10_07_0135 +
13308839-13308899,13310146-13310495,13310574-13310709,
13310806-13310942,13311041-13311164,13313393-13313871
Length = 428
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = -1
Query: 410 GPLVGMAVAFTFTTNVAQNIRGKNDKLNYFLGGATSGFVFSAWMKKGIIAVPAAVVLGAI 231
G ++ + FT + +N KN K + LG G+V+ W+ + +A PA G +
Sbjct: 62 GEILSSSNLKAFTLSELKNAT-KNFKPDSLLGEGGFGYVYKGWIDEQTLA-PARPGSGMV 119
Query: 230 AVVKK 216
VKK
Sbjct: 120 VAVKK 124
>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 330 EFIVFPTNILGNVGSECEGNCHTH*GAY-NIAHSTDCIDKT 449
+F++FP L +EC NC AY N++ S DKT
Sbjct: 1228 KFVLFPNRTLDACAAECSSNCSCVAYAYANLSSSISKGDKT 1268
>07_01_0026 + 190568-190829,192475-194534,194620-195168
Length = 956
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = -1
Query: 482 SFDVLMFSHPKGFVNTIGRMGYIVGPLVGMAVAFTFTTNV 363
SF + F+H + V+T+GR+ I+ V + + ++T ++
Sbjct: 635 SFSTMFFAHRENTVSTLGRLVLIIWLFVVLIINSSYTASL 674
>05_01_0086 +
569137-569190,569285-569336,570026-570057,570510-570543,
570680-570747,571527-571667
Length = 126
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 359 QNIRGKNDKLNYFLGGATSGFVFSA 285
+ IRG++D N +GGA SG + SA
Sbjct: 72 ERIRGRHDWKNAMIGGALSGALISA 96
>04_04_0408 +
24987218-24987760,24988406-24988534,24988617-24988952,
24990321-24990551
Length = 412
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 530 TFVTSKYAAVAGLAGASFDVLMFSHPKGFVNTI 432
TFV + + V+G+ G +F+V +F+ P F T+
Sbjct: 354 TFVVAIFGVVSGVFGMNFEVDLFNVPHAFEWTL 386
>03_03_0035 + 13977150-13979228,13979351-13979824
Length = 850
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 397 VWQLPSHSL-PTLPKIFVGKTINSITSWV-VPHLVLCLVL 284
VW +P SL P ++FV K I + SW+ V + C+ L
Sbjct: 208 VWHVPDVSLLPYTGRLFVSKNIGRLFSWLQVLSALACVAL 247
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,992,292
Number of Sequences: 37544
Number of extensions: 358655
Number of successful extensions: 827
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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