Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13j10
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC090999-20|AAP46262.1|  132|Caenorhabditis elegans Hypothetical...    32   0.32 
AC090999-19|AAK26156.1|  575|Caenorhabditis elegans Hypothetical...    32   0.32 
AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine re...    31   0.75 
AF025454-8|AAK68370.1|  334|Caenorhabditis elegans Serpentine re...    28   5.3  
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z70037-1|CAA93878.1|  493|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AC090999-20|AAP46262.1|  132|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.16b protein.
          Length = 132

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -1

Query: 548 QDIFMKTFVTSKYAAVAGLAGASFDVLMFSHPKGFVNTIGRMGYIVGPLVGMAVAFTF 375
           Q  F K  +T  YAA+   +   F  ++ +   GF +TI R+G I    + M +A  F
Sbjct: 13  QMAFTKGSITGVYAAIYTYSPELFPTVIRNTAMGFCSTIARVGAIAASYISMWIAEQF 70


>AC090999-19|AAK26156.1|  575|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.16a protein.
          Length = 575

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -1

Query: 548 QDIFMKTFVTSKYAAVAGLAGASFDVLMFSHPKGFVNTIGRMGYIVGPLVGMAVAFTF 375
           Q  F K  +T  YAA+   +   F  ++ +   GF +TI R+G I    + M +A  F
Sbjct: 456 QMAFTKGSITGVYAAIYTYSPELFPTVIRNTAMGFCSTIARVGAIAASYISMWIAEQF 513


>AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform a protein.
          Length = 342

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = +1

Query: 40  YFLKFIYIFYMIFYCLEPS-----VHPFNSSISLRRVQSCLTDLIVLV 168
           Y LKFI+IFY++F   E +     V  F+  I+ +   S + DLI  +
Sbjct: 160 YILKFIWIFYLLFVIKESTGIILYVLKFSKMITTKENHSVILDLITFI 207


>AF025454-8|AAK68370.1|  334|Caenorhabditis elegans Serpentine
           receptor, class i protein62 protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -2

Query: 388 LPSHSLPTLPKIFVGKTINSITSWVVPHLVLCLVL 284
           LP+ S+      FVG  + ++T  ++   +LC++L
Sbjct: 179 LPNFSIYEADAFFVGTVVFAVTCGIISFFILCIIL 213


>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical
           protein F32H2.5 protein.
          Length = 2586

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 279 HPSTKHKTRCGTTQEVIEFI 338
           HP TK  T CG TQE +E I
Sbjct: 426 HPFTKLVTYCGRTQEAVENI 445


>Z70037-1|CAA93878.1|  493|Caenorhabditis elegans Hypothetical
           protein T27D12.1 protein.
          Length = 493

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 55  IYIFYMIFYCLEPSVHPFNSSISLRRV 135
           +++ Y +FY   P  HPF  ++ L+++
Sbjct: 210 LFVTYALFYRNSPQKHPFVGNVELKKI 236


>Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical
           protein B0379.3b protein.
          Length = 1050

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = -1

Query: 380 TFTTNVAQNIRGKNDKLNYFLGGATSGFVFSAWMKKGIIAVP 255
           T   N+ QN+ G+ND  +Y    A++  +   ++   +++ P
Sbjct: 91  TIPDNLIQNVIGRNDNADYDFSDASNPEIMKLFLSSSLLSNP 132


>Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical
           protein K02E2.2 protein.
          Length = 1021

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = +1

Query: 241 STTAAGTAIIPFFIQALNTKPDVAPPKK*LSLSFFPRIFWAT 366
           STT   T   PFF   +   P V PP     L+ F R  W T
Sbjct: 769 STTTTTTIPPPFFALPVPPPPPVPPPPPPPFLTCFSRDTWVT 810


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,772,194
Number of Sequences: 27780
Number of extensions: 320658
Number of successful extensions: 887
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)