Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13j09
         (359 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC105005-1|AAI05006.1|  773|Homo sapiens diacylglycerol kinase, ...    31   1.4  
AC073258-1|AAS07533.1|  413|Homo sapiens unknown protein.              31   1.4  
AB018261-1|BAA34438.1|  742|Homo sapiens KIAA0718 protein protein.     31   1.4  
BC028353-1|AAH28353.1| 1241|Homo sapiens intraflagellar transpor...    28   7.6  
AF302154-1|AAG13415.1| 1241|Homo sapiens SPG protein protein.          28   7.6  
AF244931-1|AAG15428.1| 1292|Homo sapiens WDR10p-L protein.             28   7.6  
AF244930-1|AAG15427.1| 1242|Homo sapiens WDR10p protein.               28   7.6  

>BC105005-1|AAI05006.1|  773|Homo sapiens diacylglycerol kinase,
           beta 90kDa protein.
          Length = 773

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -3

Query: 276 TTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLASSPIPHT 148
           +TVK+  S  +  ++V+DK   +  +S  +DG  L  +P+P T
Sbjct: 394 STVKKEKSGSQQPNKVIDKNKMQRANSVTVDGQGLQVTPVPGT 436


>AC073258-1|AAS07533.1|  413|Homo sapiens unknown protein.
          Length = 413

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -3

Query: 276 TTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLASSPIPHT 148
           +TVK+  S  +  ++V+DK   +  +S  +DG  L  +P+P T
Sbjct: 328 STVKKEKSGSQQPNKVIDKNKMQRANSVTVDGQGLQVTPVPGT 370


>AB018261-1|BAA34438.1|  742|Homo sapiens KIAA0718 protein protein.
          Length = 742

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -3

Query: 276 TTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLASSPIPHT 148
           +TVK+  S  +  ++V+DK   +  +S  +DG  L  +P+P T
Sbjct: 332 STVKKEKSGSQQPNKVIDKNKMQRANSVTVDGQGLQVTPVPGT 374


>BC028353-1|AAH28353.1| 1241|Homo sapiens intraflagellar transport
           122 homolog (Chlamydomonas) protein.
          Length = 1241

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -3

Query: 306 VYNRSIRTHSTTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLASSPIPHTDWNEELK 127
           + NR I+   +T+K    S +  S+  ++ P    DSPR D     +  +   DW +++ 
Sbjct: 206 IVNRYIQEIPSTLKSAVYSSQ-GSEAEEEEPEEDDDSPRDDNLEERNDILAVADWGQKVS 264

Query: 126 LYAQS 112
            Y  S
Sbjct: 265 FYQLS 269


>AF302154-1|AAG13415.1| 1241|Homo sapiens SPG protein protein.
          Length = 1241

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -3

Query: 306 VYNRSIRTHSTTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLASSPIPHTDWNEELK 127
           + NR I+   +T+K    S +  S+  ++ P    DSPR D     +  +   DW +++ 
Sbjct: 206 IVNRYIQEIPSTLKSAVYSSQ-GSEAEEEEPEEEDDSPRDDNLEERNDILAVADWGQKVS 264

Query: 126 LYAQS 112
            Y  S
Sbjct: 265 FYQLS 269


>AF244931-1|AAG15428.1| 1292|Homo sapiens WDR10p-L protein.
          Length = 1292

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -3

Query: 306 VYNRSIRTHSTTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLASSPIPHTDWNEELK 127
           + NR I+   +T+K    S +  S+  ++ P    DSPR D     +  +   DW +++ 
Sbjct: 257 IVNRYIQEIPSTLKSAVYSSQ-GSEAEEEEPEEEDDSPRDDNLEERNDILAVADWGQKVS 315

Query: 126 LYAQS 112
            Y  S
Sbjct: 316 FYQLS 320


>AF244930-1|AAG15427.1| 1242|Homo sapiens WDR10p protein.
          Length = 1242

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -3

Query: 306 VYNRSIRTHSTTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLASSPIPHTDWNEELK 127
           + NR I+   +T+K    S +  S+  ++ P    DSPR D     +  +   DW +++ 
Sbjct: 206 IVNRYIQEIPSTLKSAVYSSQ-GSEAEEEEPEEEDDSPRDDNLEERNDILAVADWGQKVS 264

Query: 126 LYAQS 112
            Y  S
Sbjct: 265 FYQLS 269


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,478,445
Number of Sequences: 237096
Number of extensions: 817144
Number of successful extensions: 2055
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2055
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2190862868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)