Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13j09
         (359 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23645-3|AAK26139.1|  211|Caenorhabditis elegans Zinc finger pro...    30   0.56 
Z46812-6|CAA86848.2|  546|Caenorhabditis elegans Hypothetical pr...    26   9.1  
Z46812-5|CAA86847.2|  775|Caenorhabditis elegans Hypothetical pr...    26   9.1  
Z37093-8|CAA85469.2|  546|Caenorhabditis elegans Hypothetical pr...    26   9.1  
Z37093-7|CAA85468.2|  775|Caenorhabditis elegans Hypothetical pr...    26   9.1  

>L23645-3|AAK26139.1|  211|Caenorhabditis elegans Zinc finger
           protein protein 1,isoform b protein.
          Length = 211

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 309 HVYNRSIRTHSTTVKRTDSSHRLKSQVVDKRPRRSLDSP 193
           H +NR++   +   KR D+ HR ++  +  R + SL +P
Sbjct: 37  HNHNRTLLKRTVGGKRKDTGHRHRTSTIPPRDKSSLHAP 75


>Z46812-6|CAA86848.2|  546|Caenorhabditis elegans Hypothetical
           protein ZK669.1b protein.
          Length = 546

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 331 RWHKVCFSCVQQIYSHA 281
           +WHK CF  +QQ+   A
Sbjct: 150 QWHKACFPRIQQVCGQA 166


>Z46812-5|CAA86847.2|  775|Caenorhabditis elegans Hypothetical
           protein ZK669.1a protein.
          Length = 775

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 331 RWHKVCFSCVQQIYSHA 281
           +WHK CF  +QQ+   A
Sbjct: 379 QWHKACFPRIQQVCGQA 395


>Z37093-8|CAA85469.2|  546|Caenorhabditis elegans Hypothetical
           protein ZK669.1b protein.
          Length = 546

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 331 RWHKVCFSCVQQIYSHA 281
           +WHK CF  +QQ+   A
Sbjct: 150 QWHKACFPRIQQVCGQA 166


>Z37093-7|CAA85468.2|  775|Caenorhabditis elegans Hypothetical
           protein ZK669.1a protein.
          Length = 775

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 331 RWHKVCFSCVQQIYSHA 281
           +WHK CF  +QQ+   A
Sbjct: 379 QWHKACFPRIQQVCGQA 395


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,227,965
Number of Sequences: 27780
Number of extensions: 126943
Number of successful extensions: 417
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)