Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13j08
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...   172   4e-44
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...   164   1e-41
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   2.2  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   3.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.8  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   5.1  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   6.7  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score =  172 bits (419), Expect = 4e-44
 Identities = 85/139 (61%), Positives = 102/139 (73%)
 Frame = -2

Query: 427 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 248
           V KA  AQ+ V KG H K  RK+R S  FRRPKT E  R PKY RKS+P  +R+D Y II
Sbjct: 3   VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKII 62

Query: 247 KFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAY 68
             P+ SE+AMKKIED+NTLVF VH  ANK  IK AVKKLY ++  K+NTLIRP+G KKA+
Sbjct: 63  VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAF 122

Query: 67  VRLARDYDALDVANKIGII 11
           V+L+ D DALDVAN+IG +
Sbjct: 123 VKLSADADALDVANRIGFL 141


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score =  164 bits (399), Expect = 1e-41
 Identities = 81/139 (58%), Positives = 99/139 (71%)
 Frame = -2

Query: 427 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 248
           V KA  AQ+ V KG H K  +K+R S  FRRPKT +  R PKY RKS+    R+D Y II
Sbjct: 3   VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKII 62

Query: 247 KFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAY 68
             P+ SE+AMKKIED+NTLVF VH  ANK  IK AV+KLY +   K+NTLIRP+G KKA+
Sbjct: 63  VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAF 122

Query: 67  VRLARDYDALDVANKIGII 11
           V+L+ D DALDVAN+IG +
Sbjct: 123 VKLSADADALDVANRIGFL 141


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +2

Query: 263 IHAISLRQRLPWVFRVPR--RFKRLGSAEMHRVANFPYSLPMFTFYNLPLSLKCFSNRFH 436
           + A  +  R P   R P+  RF+ L S++   + + PY+ P   F     S +    + H
Sbjct: 196 LRASPVSSRTPSPTRFPKHARFQTLNSSDSASIYSSPYTSPTLEFSKKDASARSDILKMH 255

Query: 437 YFFLSLNPSL 466
               S  PSL
Sbjct: 256 RRTKSATPSL 265


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 5   SLYDANFVGNVQCVIISSESYVRFLLTIRPDECVDF 112
           +++ A FV +   + +S    +RFL  ++P +C DF
Sbjct: 602 TVFIAKFVESYYFLTLSVRDPIRFLQRMKPYDCYDF 637


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 38  QCVIISSESYVRFLLTIRPDECVDFSNIY 124
           +C+ I  E +  FL  I+P E V F  ++
Sbjct: 518 RCIEIGGEQFSGFLTNIKPFEAVTFQKLF 546


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 527 SQNCQTQASSFQIEDCTEAQKDWD*GTKKS 438
           S+NCQ  +    +++C EA  D D G  K+
Sbjct: 479 SENCQKLSKQIPLDECNEALFDDDNGDYKA 508


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/51 (17%), Positives = 25/51 (49%)
 Frame = -2

Query: 268  MDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINV 116
            + A+++ +F    E  ++  +DN T   I H  + ++ + A     +++ +
Sbjct: 1090 LQAFDLSRFEFIKEIFLELYDDNETNASIAHQISTQNGLDATETSFFELQI 1140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,795
Number of Sequences: 5004
Number of extensions: 44878
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)