Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13j07
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    28   1.7  
SPBC409.20c |psh3||ER chaperone SHR3 homologue Psh3|Schizosaccha...    26   6.9  
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    26   6.9  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   6.9  
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po...    26   6.9  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   9.2  

>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 92  YQYTFCFQKIKDLCIKTP 39
           Y Y+FCFQK   +C+ +P
Sbjct: 119 YGYSFCFQKFLKICLFSP 136


>SPBC409.20c |psh3||ER chaperone SHR3 homologue
           Psh3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 25/82 (30%), Positives = 39/82 (47%)
 Frame = +1

Query: 34  QYGVLMQRSFIFWKQKVYWYWPFACVNKFFMPYKLGCCKAIQ*TRYT*ICNLYNSHKFI* 213
           +YGVLM  SFIF    + ++   A VN  + P       A + T YT +     SH FI 
Sbjct: 20  RYGVLMSTSFIF---ALLFHSSVADVNTLWSPGPESAFDAAE-TYYTLVA---GSH-FIV 71

Query: 214 HI*VFCLFSRTVIFYIWKTTSS 279
              V+ +    +IF++ + T +
Sbjct: 72  KYTVYTIMGLNMIFHLIQATGA 93


>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -2

Query: 294 NYQILRTGCFPYIKYHCSRKKAEDLNMSDKFMRIIKVANLG 172
           N QI +  C P +K HCS    + +  + K  R  ++  +G
Sbjct: 141 NTQIAKELCLPPVKLHCSMLAEDAIKSAVKHYRSKQLTPVG 181


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +2

Query: 500  HDLEEIIS--S*NYFKVRNVCFIFKPICN 580
            H L  II+    N   +RNVC +F P  N
Sbjct: 1201 HHLRRIIAFEKVNKMNIRNVCIVFSPTLN 1229


>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 469 WKCMATLIARFSNKPTSSEVLTAYLTQC 386
           WK +  +  RF  K T  E+LTA   QC
Sbjct: 84  WKQVIEVDRRFRTKATEFELLTATAFQC 111


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 173  VYLVYCMALQQPSL*GMKNLFTQAKGQYQYTFCFQKIKDLCIKTPYCKHYLLI 15
            VY++   AL + SL G  N+ T+      +T   +K +D C    Y K Y+ +
Sbjct: 2200 VYVISPKALTKESLFGSMNMDTREWTDGVFTKLLRKTRDSC----YYKRYMFV 2248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,234,134
Number of Sequences: 5004
Number of extensions: 68669
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)