Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13j06
(527 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 249 1e-66
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 244 3e-65
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 148 2e-36
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 5e-07
12_01_0425 + 3347804-3348284,3348544-3348759,3349038-3349588,334... 30 1.0
01_01_0357 - 2816650-2817897 29 1.7
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353... 29 3.1
05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880 28 4.0
04_01_0440 + 5746474-5746662,5746895-5747251 28 4.0
02_02_0299 - 8726024-8726101,8726460-8726534,8726836-8726965,872... 27 9.3
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 249 bits (609), Expect = 1e-66
Identities = 112/148 (75%), Positives = 128/148 (86%)
Frame = -2
Query: 502 CRAIQMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKV 323
C ++ MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+
Sbjct: 166 CPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKI 224
Query: 322 GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDI 143
G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDI
Sbjct: 225 GIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDI 284
Query: 142 PGVRFKVVKVANVSLLALYKEKKERPRS 59
PGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 285 PGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 241 bits (589), Expect = 3e-64
Identities = 109/141 (77%), Positives = 123/141 (87%)
Frame = -2
Query: 487 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 308
MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 307 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 128
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 127 KVVKVANVSLLALYKEKKERP 65
KVVKV+ VSLLAL+KEKKE+P
Sbjct: 120 KVVKVSGVSLLALFKEKKEKP 140
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 244 bits (598), Expect = 3e-65
Identities = 111/143 (77%), Positives = 125/143 (87%)
Frame = -2
Query: 487 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 308
MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 307 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 128
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 127 KVVKVANVSLLALYKEKKERPRS 59
KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 148 bits (359), Expect = 2e-36
Identities = 67/102 (65%), Positives = 78/102 (76%)
Frame = -2
Query: 481 KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQP 302
K G+ RK HRR QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+EAKQP
Sbjct: 74 KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 132
Query: 301 NSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAG 176
NSAI KC RVQL+KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 133 NSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 5e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = -2
Query: 196 DEVLVAGFGRKGHAVGDIPGVRFKVVK 116
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>12_01_0425 +
3347804-3348284,3348544-3348759,3349038-3349588,
3349752-3349815,3349915-3349975,3350271-3350409,
3350561-3350677,3350794-3350971,3351218-3351828
Length = 805
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +3
Query: 162 PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFPFLMSCTRTHLRMAELGCLA-STPTFSRT 338
P P+T S S+ F P T+A + PF + + A STP F+ +
Sbjct: 277 PFAAKPSTGFGSTSTTLFNSPFNNTSAASSSPFASTTSIPLFTQTSSSLFANSTPGFASS 336
Query: 339 MPF 347
PF
Sbjct: 337 SPF 339
>01_01_0357 - 2816650-2817897
Length = 415
Score = 29.5 bits (63), Expect = 1.7
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Frame = +1
Query: 7 YKQRASRQQVTLSQCTPMIL----VAPFSLCRERGETRWLLLPP*NELREC--HRRRDLY 168
Y QRA R + P L + L R R E + P + L H+ ++
Sbjct: 122 YHQRAPRSPASEGPLQPWFLRRHQLRHHLLRRPRREAAAAIFRPLHVLAAARHHQAQEHQ 181
Query: 169 DRIPPLVLRRFLRCGLGNRHGG 234
DR+PPLVLR + G R G
Sbjct: 182 DRVPPLVLRHAQQLGRARRVPG 203
>02_05_0568 -
30034280-30034393,30034888-30035163,30035246-30035371,
30035595-30035753,30035893-30036063,30036374-30036493,
30036565-30036924,30038800-30039686,30039790-30040363,
30041379-30041507,30042423-30042494,30042572-30042728,
30042974-30043023,30043569-30044327
Length = 1317
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +3
Query: 147 SPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFP 257
+PT P PNP ST SM F+ PS A FP
Sbjct: 3 TPTGNP-NPNPNPSTPFEVSMLFKPPSNAPAAAPIFP 38
>05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880
Length = 898
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 165 LRPNPATSTSSFSSMWFRQPSRGT 236
L P+ +T T +FS WFR PS+ T
Sbjct: 196 LPPDGSTVTIAFSERWFRIPSKWT 219
>04_01_0440 + 5746474-5746662,5746895-5747251
Length = 181
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 428 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 330
A+GG P GY+ +G PF C KG+ PR
Sbjct: 126 AIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159
>02_02_0299 -
8726024-8726101,8726460-8726534,8726836-8726965,
8727406-8727601,8727894-8727965,8728087-8728159,
8728240-8728344,8728502-8728624,8728730-8728806,
8729064-8729108,8729214-8729433
Length = 397
Score = 27.1 bits (57), Expect = 9.3
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 30 AGHFITMYTYDLGRSFFSL*R-ARRDTLATFTTLKRTPGMSPTA*PLRPN 176
AG I Y ++ R+ F L ARR+ A TT++R TA PL+ N
Sbjct: 337 AGRDIRFYNSEMHRAAFVLPTFARRELEAYCTTVEREQQEETTAEPLKMN 386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,098,310
Number of Sequences: 37544
Number of extensions: 366253
Number of successful extensions: 1031
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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