Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13j05
(351 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar... 113 1e-26
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 28 0.37
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces... 26 1.5
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 25 3.4
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 25 4.5
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 24 6.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 6.0
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 24 7.9
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 24 7.9
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 24 7.9
>SPAC15E1.03 |rpl36a||60S ribosomal protein
L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 113 bits (271), Expect = 1e-26
Identities = 52/101 (51%), Positives = 67/101 (66%), Gaps = 2/101 (1%)
Frame = -1
Query: 309 MVNVPKQRRTYXXXXXXXXXXXV--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 136
MVN+PK R+TY +QYKK + AQG+RRYDRKQ G+GGQ+KP+F
Sbjct: 1 MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHK 60
Query: 135 XXXXXXKIVLRLECADCKVRSQVALKRCKHFELGGDQEEKG 13
K+VLRLEC CK ++Q+ LKRCKHFELGG+++ KG
Sbjct: 61 KAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKG 101
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 28.3 bits (60), Expect = 0.37
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 200 PWAACLSLDFLYCDTLCTLWHL 265
P A + L +LY DTL + WHL
Sbjct: 679 PLAVAILLHYLYTDTLLSPWHL 700
>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 129
Score = 26.2 bits (55), Expect = 1.5
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +2
Query: 119 LVVFAFFLKMGLD*PP*PCCLRS*RLLPWAACLSLDFLYCDTLCTLWHLHFLQYVLRCFG 298
L+VF FF+ G LR R+L S+ F + L TL+H + + + C G
Sbjct: 40 LLVFGFFMIAGFS-KSVSFFLRKDRMLG-----SISF-FSGLLLTLFHFPIIGFFVECLG 92
Query: 299 TFTIFE 316
F +F+
Sbjct: 93 FFNLFK 98
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 25.0 bits (52), Expect = 3.4
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -2
Query: 272 KNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLS 96
K +A K R H+ + + V ++ V SPNP S +R+K R+ S+ S
Sbjct: 241 KEQHAKKPKRKHTRSTVPTSNVEPVSQPQPSPDKI-VSSPNPPSAKREKKKRRKSSMSS 298
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 24.6 bits (51), Expect = 4.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 236 STKSPRKGTLPRVEDVMIVNSRVTVVSPN 150
ST+ PR T E V +++ R+ V++PN
Sbjct: 191 STEQPRMHTFSLSELVPLLSERLYVINPN 219
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 24.2 bits (50), Expect = 6.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 11 VPFSSWSPPSSKCLHLFNATCDLTLQSAHSRRSTIFL 121
VP + +S CL+ CD QSA + R +F+
Sbjct: 717 VPGTEFSLGCDTCLNAVMEYCDTIKQSASASRRRVFV 753
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 6.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 224 PRKGTLPRVEDVMIVNSRVTVVSPNPSS 141
P+K + P+V +M +VV+P+P+S
Sbjct: 620 PQKPSAPQVTRLMAPQDSSSVVTPSPTS 647
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 23.8 bits (49), Expect = 7.9
Identities = 15/63 (23%), Positives = 22/63 (34%)
Frame = +3
Query: 87 NRHTQDGAQFS*WFLPSF*RWVWTDHRNPAVYDHNVFYPGQRAFPWTFCTVIPCVLCGIY 266
N+ D W L W WT + ++Y + + R F VLCG
Sbjct: 1212 NQSNWDVFSIGLWALSCLTFWFWTGVYSQSLYTYEFYKSASRIFR---TPNFWAVLCGTI 1268
Query: 267 IFC 275
+ C
Sbjct: 1269 VSC 1271
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 23.8 bits (49), Expect = 7.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 59 FNATCDLTLQSAHSRRSTIFLVVFAFFL 142
+N +C LTL R +FL+ F++ L
Sbjct: 236 YNVSCILTLPIYQRRGYGVFLIDFSYLL 263
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 23.8 bits (49), Expect = 7.9
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -2
Query: 227 SPRKGTLPRVEDVMIVNSRVTVVSPNP 147
SP +G+LPR ++ + +++ NP
Sbjct: 735 SPSRGSLPRRPSSALLTNPISITKSNP 761
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,443,048
Number of Sequences: 5004
Number of extensions: 26805
Number of successful extensions: 103
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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