Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13j02
         (520 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...   159   1e-39
AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    35   0.040
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    35   0.040

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score =  159 bits (386), Expect = 1e-39
 Identities = 72/97 (74%), Positives = 79/97 (81%)
 Frame = -2

Query: 324 TRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPM 145
           T KRRN GR K  RGHV  +RCTNC RC PKDKAIKKFV+RNIVEAAAVRDI DAS Y  
Sbjct: 2   TFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQ 61

Query: 144 FQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 34
           + LPKLY KLHYC++CAIHSKVVRNRS++ RR R PP
Sbjct: 62  YALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPP 98


>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 34.7 bits (76), Expect = 0.040
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
 Frame = -2

Query: 336 LCFQTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDAS 157
           LC +  KR+    A H   H+K ++C NC+     +K+++  +IR+  E A   ++  A 
Sbjct: 62  LCGKAYKRKKNLDA-HMALHLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAP 120

Query: 156 VYPMFQL-PKLYAKLHYCVSCAIHSKVV-RNRSKKDRRIRTPPKS 28
                +L P    K H    C    K++ + R  K  ++++ P S
Sbjct: 121 CSICKELFPSTSVKTHEWY-CKNREKIIEKQRVSKILKVQSLPSS 164


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 34.7 bits (76), Expect = 0.040
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
 Frame = -2

Query: 336 LCFQTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDAS 157
           LC +  KR+    A H   H+K ++C NC+     +K+++  +IR+  E A   ++  A 
Sbjct: 180 LCGKAYKRKKNLDA-HMALHLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAP 238

Query: 156 VYPMFQL-PKLYAKLHYCVSCAIHSKVV-RNRSKKDRRIRTPPKS 28
                +L P    K H    C    K++ + R  K  ++++ P S
Sbjct: 239 CSICKELFPSTSVKTHEWY-CKNREKIIEKQRVSKILKVQSLPSS 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,161,246
Number of Sequences: 27780
Number of extensions: 214593
Number of successful extensions: 513
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)