Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13j01
         (394 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0626 + 26233178-26233233,26234083-26234284,26234800-262349...    30   0.58 
06_03_1450 + 30246702-30247346,30248603-30248689,30248789-302489...    27   7.1  
07_03_0982 + 23116343-23117089,23117227-23117313,23117424-231175...    26   9.4  

>03_05_0626 +
           26233178-26233233,26234083-26234284,26234800-26234968,
           26235767-26238768
          Length = 1142

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 334 KEHCNNCNEIYCYNSTAQRM 275
           K HC  C  ++C N T QRM
Sbjct: 86  KHHCQRCGGLFCSNCTQQRM 105


>06_03_1450 +
           30246702-30247346,30248603-30248689,30248789-30248920,
           30249016-30249162,30250375-30250440,30250519-30250629,
           30251551-30251584,30251667-30251743,30251829-30251906
          Length = 458

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -1

Query: 367 TPCFRD-S*RQTKEHCNNCNEIYCYNSTAQR 278
           T C  D S    + HC NC +I+C   T  R
Sbjct: 347 TACTADFSAFNRRHHCRNCGDIFCDKCTQGR 377


>07_03_0982 +
           23116343-23117089,23117227-23117313,23117424-23117555,
           23118135-23118269,23118644-23118709,23118797-23118907,
           23119237-23119329,23119555-23119659,23119752-23119829
          Length = 517

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 334 KEHCNNCNEIYC 299
           + HC NC EI+C
Sbjct: 389 RHHCRNCGEIFC 400


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,630,561
Number of Sequences: 37544
Number of extensions: 98500
Number of successful extensions: 261
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)