Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13i21
         (320 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0171 - 26127547-26127592,26127955-26128079,26128187-261283...    27   4.3  
12_02_0956 + 24776359-24779085                                         26   7.6  

>05_06_0171 -
           26127547-26127592,26127955-26128079,26128187-26128336,
           26128738-26128827,26129012-26129251,26129735-26130394
          Length = 436

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 236 RKRLLKKGHFNKNKKNSYVPSMWIEH 159
           ++ LL  G+  KNK +S  P++W +H
Sbjct: 289 KQHLLWYGYDRKNKMHSLCPAIWSKH 314


>12_02_0956 + 24776359-24779085
          Length = 908

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 221 KKGHFNKNKKNSYVPSMW 168
           K GHF K K  S +PS W
Sbjct: 523 KGGHFKKGKLGSPLPSSW 540


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,785,735
Number of Sequences: 37544
Number of extensions: 49491
Number of successful extensions: 75
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)