Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13i20
         (219 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    25   1.0  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   1.4  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    23   4.1  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    23   5.5  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    23   5.5  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    22   9.6  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    22   9.6  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    22   9.6  
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz...    22   9.6  
SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc...    22   9.6  
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    22   9.6  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    22   9.6  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    22   9.6  

>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 61  ISPADNKHVFIIQCCMFS-KGTSILRFYITIKPILCAEKENI 183
           I+   NK+    +  +FS  G   L++  T+  I CA+K+NI
Sbjct: 145 INQVQNKNTLRSRILIFSLTGDVALQYIPTMNCIFCAQKKNI 186


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 171 LGT*YRFYCYVKP*Y*CAFGKHTALYYEDVFVIC 70
           LG   R +  VKP     FGK   L +E +F+ C
Sbjct: 206 LGKGIRLFERVKPSMIMPFGKRGLLVFESLFIHC 239


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 134 RNIDVPLENIQHCIMKTCLLSAGEIIK 54
           +++ + LEN+Q      C++S  +II+
Sbjct: 328 QDVKLALENLQDFFSSKCIMSGSKIIE 354


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 95  IMKTCLLSAGEIIKHNAMMK*KVDSAALCRR 3
           I+  CLLS+ E  KH   +       A+C R
Sbjct: 63  ILMVCLLSSSEKRKHPVFVFNSASIVAMCLR 93



 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -3

Query: 172 SRHIISVLLLCKTVILMCLWKT 107
           ++ I++V+  C TV+++  W T
Sbjct: 159 TQRIMTVISACLTVLVLAFWIT 180


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -1

Query: 96  YYEDVFVICW*NY*AQRYDEIESRQR 19
           YY+  F+IC  +   Q+Y+ +++++R
Sbjct: 413 YYKGQFIICISDGIEQQYERLKNKKR 438


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -2

Query: 128 IDVPLENIQHCIMKT 84
           +DVP+E+IQ+ + +T
Sbjct: 228 LDVPIESIQNALQQT 242


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 110 FPKAHQYYGFT*Q*NRY 160
           FPK + YY FT   NR+
Sbjct: 608 FPKRNPYYKFTSTINRF 624


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 177 KHTALQEVLPGEDY 218
           KHT +Q V+PG D+
Sbjct: 64  KHTLVQVVVPGVDH 77


>SPBC342.04 |||adhesion regulating molecule protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 291

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 144 NNKTDIMCREGKHTALQEVLP 206
           +N TD++C+EG    L   +P
Sbjct: 196 SNLTDLLCQEGVIDRLMPYMP 216


>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 297

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 173 FSAHNIGFIVM*NRNIDVP 117
           F AH +G I + + NID P
Sbjct: 61  FLAHRLGMIPLDSSNIDEP 79


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 52  CLIISPADNKHVFII 96
           C+I+SP D K  +II
Sbjct: 76  CIIVSPMDFKQQYII 90


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 148 LLCKTVILMCLWKTYSIV 95
           + C  +IL+C++K  SIV
Sbjct: 7   IFCVCLILLCIFKENSIV 24


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 203 KNFLQCCMFSFSAHNIGFI 147
           +NF++C    F + N+G I
Sbjct: 471 RNFMKCIALMFDSMNLGVI 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 954,340
Number of Sequences: 5004
Number of extensions: 16892
Number of successful extensions: 45
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)