Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13i20
         (219 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   0.32 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   0.32 
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    19   5.3  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      19   5.3  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    19   6.9  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    19   6.9  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    19   6.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    19   6.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    19   9.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    19   9.2  

>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 23.4 bits (48), Expect = 0.32
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 153 TDIMCREGKHTALQEVLPGED 215
           T++   E  H ALQE +PG++
Sbjct: 230 TEVKSVEMHHEALQEAVPGDN 250


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 0.32
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 153 TDIMCREGKHTALQEVLPGED 215
           T++   E  H ALQE +PG++
Sbjct: 287 TEVKSVEMHHEALQEAVPGDN 307


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 19.4 bits (38), Expect = 5.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 166 HIISVLLLCKTVILMCL 116
           H+I+VLL    VIL+ +
Sbjct: 10  HLITVLLFSFVVILLII 26


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 19.4 bits (38), Expect = 5.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 166 HIISVLLLCKTVILMCL 116
           H+I+VLL    VIL+ +
Sbjct: 10  HLITVLLFSFVVILLII 26


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -1

Query: 84  VFVICW 67
           VFV+CW
Sbjct: 335 VFVVCW 340


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -1

Query: 84  VFVICW 67
           VFV+CW
Sbjct: 335 VFVVCW 340


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -1

Query: 84  VFVICW 67
           VFV+CW
Sbjct: 335 VFVVCW 340


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.0 bits (37), Expect = 6.9
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -1

Query: 84  VFVICW 67
           VF+ICW
Sbjct: 343 VFIICW 348


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 18.6 bits (36), Expect = 9.2
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -1

Query: 180 VFLLGT*YRFYCYVK 136
           + +LG   R YCY +
Sbjct: 206 IVMLGIYCRLYCYAQ 220


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 18.6 bits (36), Expect = 9.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 81  FVICW*NY*AQR 46
           F ICW  + AQR
Sbjct: 294 FFICWAPFHAQR 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,927
Number of Sequences: 438
Number of extensions: 1148
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3281070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)