Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13i19
(705 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF132183-1|AAD34771.1| 834|Drosophila melanogaster unknown prot... 32 0.66
AE014297-2518|AAF55551.2| 834|Drosophila melanogaster CG18617-P... 32 0.66
AE014297-2517|AAF55552.2| 834|Drosophila melanogaster CG18617-P... 32 0.66
AY119612-1|AAM50266.1| 315|Drosophila melanogaster LD38004p pro... 32 0.87
AY051922-1|AAK93346.1| 535|Drosophila melanogaster LD40717p pro... 32 0.87
AE014296-533|AAF47703.1| 535|Drosophila melanogaster CG2162-PA ... 32 0.87
AY094828-1|AAM11181.1| 1765|Drosophila melanogaster LD40380p pro... 30 3.5
AE014297-3524|AAF56278.2| 2232|Drosophila melanogaster CG31132-P... 30 3.5
AY122186-1|AAM52698.1| 1038|Drosophila melanogaster LD43109p pro... 29 4.7
AE013599-2800|AAF57614.1| 1038|Drosophila melanogaster CG15104-P... 29 4.7
>AF132183-1|AAD34771.1| 834|Drosophila melanogaster unknown
protein.
Length = 834
Score = 32.3 bits (70), Expect = 0.66
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 312 NPRIFQCIYFNVLFFERFSSFMHSNVFVAAVHFMILCKR 428
NP ++ CI F LF F H + V +M+LC+R
Sbjct: 390 NPALYTCITFPFLFAVMFGDLGHGLILVLFGAWMVLCER 428
>AE014297-2518|AAF55551.2| 834|Drosophila melanogaster CG18617-PB,
isoform B protein.
Length = 834
Score = 32.3 bits (70), Expect = 0.66
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 312 NPRIFQCIYFNVLFFERFSSFMHSNVFVAAVHFMILCKR 428
NP ++ CI F LF F H + V +M+LC+R
Sbjct: 390 NPALYTCITFPFLFAVMFGDLGHGLILVLFGAWMVLCER 428
>AE014297-2517|AAF55552.2| 834|Drosophila melanogaster CG18617-PA,
isoform A protein.
Length = 834
Score = 32.3 bits (70), Expect = 0.66
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 312 NPRIFQCIYFNVLFFERFSSFMHSNVFVAAVHFMILCKR 428
NP ++ CI F LF F H + V +M+LC+R
Sbjct: 390 NPALYTCITFPFLFAVMFGDLGHGLILVLFGAWMVLCER 428
>AY119612-1|AAM50266.1| 315|Drosophila melanogaster LD38004p
protein.
Length = 315
Score = 31.9 bits (69), Expect = 0.87
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Frame = -2
Query: 209 ENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSK----SKKIPIGKVVSTPRKRLKQHTN 42
E D D + +R + +R R + K+ FNS +KI + P T
Sbjct: 42 EPAKCDNDVRELQRASKEINRSNRRIMKQTFNSDVLEIPEKIETSATKAIPTSPQASATA 101
Query: 41 TPPHYDTSEDEDE 3
PP T+ED+DE
Sbjct: 102 KPPVDSTTEDDDE 114
>AY051922-1|AAK93346.1| 535|Drosophila melanogaster LD40717p
protein.
Length = 535
Score = 31.9 bits (69), Expect = 0.87
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Frame = -2
Query: 209 ENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSK----SKKIPIGKVVSTPRKRLKQHTN 42
E D D + +R + +R R + K+ FNS +KI + P T
Sbjct: 262 EPAKCDNDVRELQRASKEINRSNRRIMKQTFNSDVLEIPEKIETSATKAIPTSPQASATA 321
Query: 41 TPPHYDTSEDEDE 3
PP T+ED+DE
Sbjct: 322 KPPVDSTTEDDDE 334
>AE014296-533|AAF47703.1| 535|Drosophila melanogaster CG2162-PA
protein.
Length = 535
Score = 31.9 bits (69), Expect = 0.87
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Frame = -2
Query: 209 ENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSK----SKKIPIGKVVSTPRKRLKQHTN 42
E D D + +R + +R R + K+ FNS +KI + P T
Sbjct: 262 EPAKCDNDVRELQRASKEINRSNRRIMKQTFNSDVLEIPEKIETSATKAIPTSPQASATA 321
Query: 41 TPPHYDTSEDEDE 3
PP T+ED+DE
Sbjct: 322 KPPVDSTTEDDDE 334
>AY094828-1|AAM11181.1| 1765|Drosophila melanogaster LD40380p protein.
Length = 1765
Score = 29.9 bits (64), Expect = 3.5
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Frame = -2
Query: 230 SNDRLNNENTSTDYDTEDEERVNTFN-SRKRRVVAKRAFNSKSKKIPIGKVV-------S 75
S++ + E+ D D +DEE +T SR+R VA A +S S ++ S
Sbjct: 1067 SSEDEDEEDDDDDDDDDDEEEASTRGRSRRRNGVAVSASSSGSNRVTSSSAAQQRRGKSS 1126
Query: 74 TPRKRLKQHTNTPPHYDTSEDEDE 3
+ + ++ T+ D S DE+E
Sbjct: 1127 SSEEEEEEETSAQATSDASSDEEE 1150
>AE014297-3524|AAF56278.2| 2232|Drosophila melanogaster CG31132-PA
protein.
Length = 2232
Score = 29.9 bits (64), Expect = 3.5
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Frame = -2
Query: 230 SNDRLNNENTSTDYDTEDEERVNTFN-SRKRRVVAKRAFNSKSKKIPIGKVV-------S 75
S++ + E+ D D +DEE +T SR+R VA A +S S ++ S
Sbjct: 1534 SSEDEDEEDDDDDDDDDDEEEASTRGRSRRRNGVAVSASSSGSNRVTSSSAAQQRRGKSS 1593
Query: 74 TPRKRLKQHTNTPPHYDTSEDEDE 3
+ + ++ T+ D S DE+E
Sbjct: 1594 SSEEEEEEETSAQATSDASSDEEE 1617
>AY122186-1|AAM52698.1| 1038|Drosophila melanogaster LD43109p
protein.
Length = 1038
Score = 29.5 bits (63), Expect = 4.7
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -2
Query: 206 NTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSK-SKKIPIGKVVSTPRKRLKQH 48
++S+D D+ D N+ +K+ KR N+K SKK IGK S RK Q+
Sbjct: 666 SSSSDEDSSDSSTTNSEPPKKKS--RKRVANNKRSKKESIGKRTSRKRKAKDQN 717
>AE013599-2800|AAF57614.1| 1038|Drosophila melanogaster CG15104-PA
protein.
Length = 1038
Score = 29.5 bits (63), Expect = 4.7
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -2
Query: 206 NTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSK-SKKIPIGKVVSTPRKRLKQH 48
++S+D D+ D N+ +K+ KR N+K SKK IGK S RK Q+
Sbjct: 666 SSSSDEDSSDSSTTNSEPPKKKS--RKRVANNKRSKKESIGKRTSRKRKAKDQN 717
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,636,166
Number of Sequences: 53049
Number of extensions: 415161
Number of successful extensions: 1452
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1447
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3108380451
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -