Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13i19
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41992-7|AAA83358.1|  374|Caenorhabditis elegans Hypothetical pr...    33   0.26 
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti...    31   0.80 
AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical ...    29   3.2  
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    29   4.3  
AL031624-3|CAA20939.1|  416|Caenorhabditis elegans Hypothetical ...    29   4.3  
AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical ...    29   4.3  
AF039713-6|AAB96723.1|  829|Caenorhabditis elegans Hypothetical ...    29   4.3  
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/...    28   5.7  
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/...    28   5.7  
AL032645-1|CAA21674.1|  123|Caenorhabditis elegans Hypothetical ...    28   5.7  
AF016425-8|AAD34667.2|  239|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z68882-13|CAA93102.1|  296|Caenorhabditis elegans Hypothetical p...    28   7.5  
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p...    28   7.5  
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.       28   7.5  
AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.      28   7.5  
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge...    28   7.5  
AF026204-7|AAB71247.1|  272|Caenorhabditis elegans Hypothetical ...    27   9.9  

>U41992-7|AAA83358.1|  374|Caenorhabditis elegans Hypothetical
           protein F32E10.6 protein.
          Length = 374

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = -2

Query: 236 TKSNDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRK-R 60
           TK + +     T  + D E+EE V T    K+   +KRA   + +     +VV TP+K +
Sbjct: 237 TKKSKKSKRAETPEEEDDEEEEVVKTPKKTKK---SKRAETPEEEDEVEEEVVKTPKKSK 293

Query: 59  LKQHTNTPPHYDTSEDEDE 3
             +        +TS++EDE
Sbjct: 294 SSKSPKKSKRAETSDEEDE 312



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = -2

Query: 239 KTKSNDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKR 60
           K+      + +  ++D D E+EE V T  S+K    +KRA   + +     +VV TP+K 
Sbjct: 212 KSPKKSSKSTKRAASD-DDEEEEPVATKKSKK----SKRAETPEEEDDEEEEVVKTPKKT 266

Query: 59  LK-QHTNTPPHYDTSEDE 9
            K +   TP   D  E+E
Sbjct: 267 KKSKRAETPEEEDEVEEE 284


>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
           protein protein 6 protein.
          Length = 1106

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -2

Query: 224 DRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRA-FNSKSKKIPIGKVVSTPRKRLKQH 48
           D  +   ++  Y     E +N   S ++RVV + A    K    P G V +TP K+ K  
Sbjct: 748 DNFSGGGSTPSYSKSYLEEMNRVMSTRKRVVEEAAEVQKKPNPAPSG-VTATPPKKAKTS 806

Query: 47  TNTPPH 30
            + PP+
Sbjct: 807 NSVPPN 812


>AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.3 protein.
          Length = 679

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/79 (20%), Positives = 40/79 (50%)
 Frame = -2

Query: 239 KTKSNDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKR 60
           ++K + +   +++S D + E   +  +  S+K     ++A +S+ + + + K   +P+K 
Sbjct: 297 RSKKSKKAVIDSSSEDEEEEKSSKKRSKKSKKESDEEQQASDSEEEVVEVKKNSKSPKKT 356

Query: 59  LKQHTNTPPHYDTSEDEDE 3
            K+        ++S DE+E
Sbjct: 357 PKKTAVKEESEESSGDEEE 375


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
 Frame = -2

Query: 239 KTKSNDRLNNENTST----DYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVST 72
           K K   RL  EN       D D++DE+       +++   A+++  S SKK   GK    
Sbjct: 172 KRKEKKRLEKENRKIKEEDDEDSDDEDDEKAKKKKRKSKGAEKSKPSTSKKDAGGK-KEP 230

Query: 71  PRKRLKQHTNTPPHYDTSEDE 9
           P+K++K+  +    ++  ++E
Sbjct: 231 PKKKVKKEEDIEDIWEWWKEE 251


>AL031624-3|CAA20939.1|  416|Caenorhabditis elegans Hypothetical
           protein H16D19.4 protein.
          Length = 416

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 291 LVGGFARNPRIFQCIYFNVLFFERFSSFMHSNVFVAAVHFMILCKRLDK*LFG 449
           + GG   +P        N L F  F    HSN  +A++ + ++ K++D  + G
Sbjct: 276 IAGGVTFHPSAMYTRNSNFLNFANFIIMQHSNKEIASMRYELMKKKVDSDVIG 328


>AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical
           protein F28H6.4 protein.
          Length = 1000

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/52 (40%), Positives = 29/52 (55%)
 Frame = -2

Query: 200 STDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKRLKQHT 45
           S +YD ED E  +   ++KR  + KR  NSKSK   +GK    PRK+ +  T
Sbjct: 24  SFNYDDEDYEPPSK-RTQKRSSLTKR--NSKSKTPEVGK---APRKQTEHFT 69


>AF039713-6|AAB96723.1|  829|Caenorhabditis elegans Hypothetical
           protein F57B10.6 protein.
          Length = 829

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -2

Query: 185 TEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKRLKQHTNTPPHYDTSEDE 9
           T D+ R    +  + R++ K+    +SK    G + +  RKR++QH  T    D  E+E
Sbjct: 332 TPDDVREEIVDRLEERLIDKKERGYQSKS---GMLEAIARKRIRQHYGTETVEDKKEEE 387


>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           c protein.
          Length = 1510

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/75 (25%), Positives = 34/75 (45%)
 Frame = -2

Query: 239 KTKSNDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKR 60
           + KS +R   ++ +  +D+ DE   +T    +RR   +    S  +K       ST R+ 
Sbjct: 482 RPKSPNRSKKDSRAFGWDSTDESDEDT----RRRRSGRSQNRSSERKFQTTSSSSTRREL 537

Query: 59  LKQHTNTPPHYDTSE 15
              HTN+ P+  + E
Sbjct: 538 SSTHTNSVPNLKSHE 552


>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           a protein.
          Length = 1507

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/75 (25%), Positives = 34/75 (45%)
 Frame = -2

Query: 239 KTKSNDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKR 60
           + KS +R   ++ +  +D+ DE   +T    +RR   +    S  +K       ST R+ 
Sbjct: 482 RPKSPNRSKKDSRAFGWDSTDESDEDT----RRRRSGRSQNRSSERKFQTTSSSSTRREL 537

Query: 59  LKQHTNTPPHYDTSE 15
              HTN+ P+  + E
Sbjct: 538 SSTHTNSVPNLKSHE 552


>AL032645-1|CAA21674.1|  123|Caenorhabditis elegans Hypothetical
           protein Y67A6A.1 protein.
          Length = 123

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -2

Query: 242 TKTKSNDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRK 63
           TK KSN  ++   TS D + +D+         K    AK     K+K+    KVV+TP+K
Sbjct: 22  TKKKSNLSISKSQTSVDMNEKDKS--------KEAKEAKELKEKKAKEEAEKKVVATPKK 73


>AF016425-8|AAD34667.2|  239|Caenorhabditis elegans Hypothetical
           protein F59A7.5a protein.
          Length = 239

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -2

Query: 221 RLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKRL 57
           R N   +S+  +  D++     + RK++   K+   +K KK+   K   T +K+L
Sbjct: 103 RSNKNASSSGSEENDQKDGQEDHHRKKKGATKKKVTTKKKKVTTKKPKKTTKKKL 157


>Z68882-13|CAA93102.1|  296|Caenorhabditis elegans Hypothetical
           protein C47E12.10 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = -2

Query: 209 ENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRK 63
           E + ++ +TEDE+   + N R+R+   KRA + K KKI   KV +  ++
Sbjct: 46  EKSESEDETEDED---SENQRRRK---KRAADKKRKKIKAAKVAAQKKE 88


>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
           protein 40 protein.
          Length = 1415

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -2

Query: 170 RVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKRLKQHTNTPPHYDTSE 15
           ++   +S +  V++ RAFN+     PI + V T  +    H N     D S+
Sbjct: 793 KIARLHSERDYVISLRAFNNLGSGFPIYETVRTLSRETPSHFNEDSDSDDSD 844


>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
          Length = 1415

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -2

Query: 170 RVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRKRLKQHTNTPPHYDTSE 15
           ++   +S +  V++ RAFN+     PI + V T  +    H N     D S+
Sbjct: 793 KIARLHSERDYVISLRAFNNLGSGFPIYETVRTLSRETPSHFNEDSDSDDSD 844


>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
          Length = 1359

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/80 (26%), Positives = 35/80 (43%)
 Frame = -2

Query: 242 TKTKSNDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRK 63
           +K KS       ++ +  ++E+E +V      K + V KRA  S+       K     +K
Sbjct: 140 SKKKSKKTKKQTSSESSEESEEERKVKKSKKNKEKSVKKRAETSEESD-EDEKPSKKSKK 198

Query: 62  RLKQHTNTPPHYDTSEDEDE 3
            LK+   +    + SEDE E
Sbjct: 199 GLKKKAKSESESE-SEDEKE 217


>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
           related protein 1 protein.
          Length = 1359

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/80 (26%), Positives = 35/80 (43%)
 Frame = -2

Query: 242 TKTKSNDRLNNENTSTDYDTEDEERVNTFNSRKRRVVAKRAFNSKSKKIPIGKVVSTPRK 63
           +K KS       ++ +  ++E+E +V      K + V KRA  S+       K     +K
Sbjct: 140 SKKKSKKTKKQTSSESSEESEEERKVKKSKKNKEKSVKKRAETSEESD-EDEKPSKKSKK 198

Query: 62  RLKQHTNTPPHYDTSEDEDE 3
            LK+   +    + SEDE E
Sbjct: 199 GLKKKAKSESESE-SEDEKE 217


>AF026204-7|AAB71247.1|  272|Caenorhabditis elegans Hypothetical
           protein C30E1.2 protein.
          Length = 272

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +1

Query: 310 GIQEFFNVFILTYFSSSAFLALC---IAMSSSPPFIL 411
           GIQ++  ++IL + S+S FLAL      +S  P FI+
Sbjct: 40  GIQKWQQLYILAFSSASQFLALAANIFELSGVPGFII 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,936,916
Number of Sequences: 27780
Number of extensions: 226958
Number of successful extensions: 765
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)