Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13i17
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    97   8e-22
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   0.18 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   2.3  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    26   2.3  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    26   2.3  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   3.0  
SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|ch...    25   3.9  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   3.9  
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   5.2  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    24   6.9  
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   9.1  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   9.1  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    24   9.1  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    24   9.1  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    24   9.1  

>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 97.1 bits (231), Expect = 8e-22
 Identities = 37/64 (57%), Positives = 46/64 (71%)
 Frame = -2

Query: 243 RFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTF 64
           RFPN NQT+HC+QSY+D+ RC K +GE + PC  F   Y+SLCP EWV++WD QR  GTF
Sbjct: 20  RFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTF 79

Query: 63  AGRI 52
              I
Sbjct: 80  PAPI 83


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 29.5 bits (63), Expect = 0.18
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = -3

Query: 215  TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 57
            T++ V  TST      A NTS +  S      S P++ ST   TS P   S V
Sbjct: 2353 TSSTVVNTSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV 2405



 Score = 28.7 bits (61), Expect = 0.32
 Identities = 19/53 (35%), Positives = 23/53 (43%)
 Frame = -3

Query: 215  TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 57
            T++ V  TST      A NTS    S      S P++ ST   TS P   S V
Sbjct: 1117 TSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 1169



 Score = 28.7 bits (61), Expect = 0.32
 Identities = 19/53 (35%), Positives = 23/53 (43%)
 Frame = -3

Query: 215  TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 57
            T++ V  TST      A NTS    S      S P++ ST   TS P   S V
Sbjct: 2761 TSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 2813



 Score = 26.6 bits (56), Expect = 1.3
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = -3

Query: 215  TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 57
            T++ V  TST        NTS    S      S P++ ST   TS P   S V
Sbjct: 1177 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSV 1229



 Score = 26.6 bits (56), Expect = 1.3
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = -3

Query: 215  TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 57
            T++ V  TST        NTS    S      S P++ ST   TS P   S V
Sbjct: 1489 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSV 1541



 Score = 25.0 bits (52), Expect = 3.9
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = -3

Query: 215  TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 57
            T++ V  TST        NTS    S      S P++ ST   +S P   S V
Sbjct: 1357 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSV 1409



 Score = 25.0 bits (52), Expect = 3.9
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = -3

Query: 215  TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 57
            T++ V  TST        NTS    S      S P++ ST   +S P   S V
Sbjct: 2197 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSV 2249


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 20/74 (27%), Positives = 39/74 (52%)
 Frame = -3

Query: 284 SNRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMS 105
           S+ P ++   +S+  S +     T +  + +S+ +   ++  +S +TIS   +  S+P S
Sbjct: 297 SSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFS-SSPTSSSSTIS---SSSSSPSS 352

Query: 104 GSTSGTTSAPKAPS 63
            S S TTS+ K+ S
Sbjct: 353 SSFSSTTSSSKSSS 366


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -2

Query: 282 KSPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRG-EKYEPCYYFKRVY 127
           ++ ++ +++  DP  P +  + +C  +Y +    +K+RG +KY+P +    +Y
Sbjct: 183 ETQSEKRSSQTDPSLPFKTNSLNCDVTYEEGPLTKKLRGPKKYKPSHSSWDIY 235


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 25/70 (35%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
 Frame = -3

Query: 257 HLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISREC-TGLSAPMSG--STSGT 87
           H ST  + T     T T  T T T  R  A  NTS+ + S     G SA  S    T   
Sbjct: 141 HSSTTANRTTSTPTTTTART-TRTTPRPTATTNTSNQSTSNSTRNGTSAATSNGTGTGAG 199

Query: 86  TSAPKAPSPV 57
           T A    SPV
Sbjct: 200 TGASHRSSPV 209


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 24/65 (36%), Positives = 32/65 (49%)
 Frame = -3

Query: 272 PTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTS 93
           PT KQ L+ H     +RR T+  +  T+T +    A NT+  T S      SA  S STS
Sbjct: 486 PTGKQ-LALH----PLRRETSI-LDSTNTTSTN--ATNTTTTTSSSSTASSSASASSSTS 537

Query: 92  GTTSA 78
            T+ A
Sbjct: 538 ATSGA 542


>SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 186

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 172 NFLATVEVHVTLVAVPRLILVREPWVERCCFEVGGRFDHLRHIAYYYLAVSWI 330
           N+     +H+ L+A  RLI    P V R   E+     +L ++A  ++   W+
Sbjct: 40  NYKGAWVIHIVLIAALRLIFHAIPSVSR---ELAWTLTNLTYMAGSFIMFHWV 89


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
 Frame = -3

Query: 281  NRPPTSKQHL---STHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAP 111
            NRPP         +T  +       T  K   T + ++   +  TS A+     +  SAP
Sbjct: 1024 NRPPAPAMQARPNTTQAAAPVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSAP 1083

Query: 110  MSGSTSGTTSAPKAPSP 60
            ++ + S  ++ P  P P
Sbjct: 1084 VANNVSKPSAVPPPPPP 1100


>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 72

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 87  CPTCRPTHWGRETCTL 134
           CPT  PT W   +CT+
Sbjct: 3   CPTHGPTTWNPHSCTV 18


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 11/48 (22%), Positives = 25/48 (52%)
 Frame = -3

Query: 206 KVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPS 63
           + T   +++++ +  +TS AT++     +S+     +    SAP+A S
Sbjct: 303 RTTEVPSISKQLSKSSTSIATVAPSLASVSSVTKSPSPTPQSAPRAQS 350


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -3

Query: 272 PTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSH 150
           P+SKQ +  H    K+R G  T   ++          NT+H
Sbjct: 81  PSSKQDIELHKLHEKLRNGQITTKEYSEKSKELGGDLNTTH 121


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 119 SAPMSGSTSGTTSAPKAPSPVGFRS 45
           +AP +  T  TT  P A SP+ ++S
Sbjct: 433 NAPAAPGTMYTTPLPTANSPIAYQS 457


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -3

Query: 266  SKQHLSTH-GSLT-KIRRGTATKVTWTST 186
            SK+ +  H GS++ + RRG  T+  WT+T
Sbjct: 1192 SKELVELHNGSMSCQSRRGVGTRFMWTAT 1220


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = -3

Query: 284 SNRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMS 105
           S+RP   ++ +ST  + + +    ++  + TST      +  TSH + S      SA  S
Sbjct: 580 SSRP---EETISTVSTTSTVSESGSSSASITSTYPSSTLSMTTSHLS-SSSVHSSSAHSS 635

Query: 104 GSTSGTTSAP 75
            S S + S P
Sbjct: 636 SSRSSSMSLP 645


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = -3

Query: 272 PTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTS 93
           P S  + +T  S +     +    T TS  +    + N++ AT +      SA  + STS
Sbjct: 342 PLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTS 401

Query: 92  GTTSAP 75
            +++AP
Sbjct: 402 VSSTAP 407



 Score = 23.8 bits (49), Expect = 9.1
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = -3

Query: 272 PTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTS 93
           P S  + +T  S +     +    T TS  +    + N++ AT +      SA  + STS
Sbjct: 456 PLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTS 515

Query: 92  GTTSAP 75
            +++AP
Sbjct: 516 VSSTAP 521


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,552,449
Number of Sequences: 5004
Number of extensions: 31152
Number of successful extensions: 105
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)