SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13i05
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    34   0.017
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    33   0.040
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    33   0.040
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    32   0.092
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    31   0.16 
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    31   0.21 
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    30   0.28 
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    30   0.28 
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos...    29   0.49 
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||...    29   0.86 
SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch...    29   0.86 
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    28   1.1  
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.5  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    28   1.5  
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb...    28   1.5  
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo...    28   1.5  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    27   2.0  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    26   4.6  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    26   6.1  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    26   6.1  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   8.0  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    25   8.0  
SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   8.0  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   8.0  
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ...    25   8.0  

>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 34.3 bits (75), Expect = 0.017
 Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 16/147 (10%)
 Frame = -2

Query: 587 NALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFE---QFELR 417
           N++  +QT+    DL+ + E +   +K L   ++      ET KND  N  E    +E  
Sbjct: 315 NSINEIQTQNR--DLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETE 372

Query: 416 LNELDAKLNMLQS----------AEKLKTAIVTES---KNGTVTFPRDITKHQHLAIFSE 276
           + E   KLN  ++          A++LK + ++ES   K G + F   +++ + L ++ E
Sbjct: 373 MKEARQKLNNKEALISHYDDDFRAKELKISRLSESLREKAGLLEFQSSVSEQRDL-LYQE 431

Query: 275 RIDDRIKLAFVLGQERHFRKRKMRFED 195
           +I   IK       E  FRK +   E+
Sbjct: 432 QIQSSIK-----DMENVFRKNEYLMEE 453


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 33.1 bits (72), Expect = 0.040
 Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
 Frame = -2

Query: 602 FDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHE-TFKNDVGN--RFE 432
           F+    ++  + T G  + + + IE +L  ++    +S  F+ T+  + K++V     F 
Sbjct: 559 FEQLLFSISKVTTNGPSETISEDIEEILPSLESSERSSTPFLNTNSASLKSEVVQLTTFS 618

Query: 431 QFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVT 324
            F+L+L  L   L++LQS      + +  S+ G  T
Sbjct: 619 DFQLKLKTLQCVLDILQSLSNWAESGLYLSRRGVST 654


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 33.1 bits (72), Expect = 0.040
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = -2

Query: 563 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNML 384
           EGE DD+   +ES  + +++   +S+K +   E  +ND   R    E + + L A L + 
Sbjct: 373 EGELDDILTTLESDREQLRRHEEHSQKLLKFIEEIRNDYEERIHALESQNSALKAHLRLA 432

Query: 383 QSA 375
             A
Sbjct: 433 VDA 435


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 31.9 bits (69), Expect = 0.092
 Identities = 23/77 (29%), Positives = 40/77 (51%)
 Frame = -2

Query: 569 QTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLN 390
           + EG++ DL  KI  + K   KLNT     ++T +     +    ++ E R+  L+ +LN
Sbjct: 512 ELEGKKADLTSKINRLDKDFVKLNTTYS--LLTDQVKTKQLA--LQEIESRVIRLEERLN 567

Query: 389 MLQSAEKLKTAIVTESK 339
           MLQ    ++ AI + S+
Sbjct: 568 MLQKL-SMQPAISSSSE 583


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
 Frame = -2

Query: 629 LLKILMRLNFDNKSNALLHLQTEGERDDLRDK-----------IESVLKHVKKLNTNSEK 483
           L K+L     D++   LL  Q E ER DL+              E+ +K ++   TNS+ 
Sbjct: 521 LRKLLREQTQDSQKLRLLVEQLELERQDLKQAGENHYSNLSSDYETQIKSLESSLTNSQA 580

Query: 482 FMVTHETFKNDVGNRFEQFELRLNELDAKLNML 384
             V+ +   N++ ++ ++ +L+LNE + K   L
Sbjct: 581 ECVSFQEKINELNSQIDELKLKLNEANKKYQEL 613



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -2

Query: 503 LNTNSEKFMVTHETFKNDVGNRFEQFELRLNELD-AKLNMLQSAEKLKTAIVTESKN 336
           L  NSEKF    E+ K+ V N  +      NE+D  + N+L +    +T      KN
Sbjct: 360 LKENSEKFKQNSESLKSRVDNLNDYITKLQNEIDECRRNLLWAESSCETIREENQKN 416


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -2

Query: 458 KNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFPRDITKH 300
           +ND  + F+   L LNE+++++N+L+ A     A +T   NG     + I  H
Sbjct: 733 RNDTLSLFQN-SLYLNEVESRINILEQAGMYPIAYLTAKSNGLEEKAQQILSH 784


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 23/109 (21%), Positives = 43/109 (39%)
 Frame = -2

Query: 644 ATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHE 465
           AT+QG   +L+       +N  L L  E   DD  D+      +   +   ++   +   
Sbjct: 317 ATRQGSFALLLFAIISLAANTALPLLLEDTEDDEEDESSDASNNEYNIQERNDLGNIRTG 376

Query: 464 TFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFP 318
           T    +GN  E    R     ++  +L S+  + T I ++ +   +T P
Sbjct: 377 TNTPRLGNLSETTSFRSENEPSRRRLLPSSRSIMTTISSKVQIKGLTLP 425


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 12/141 (8%)
 Frame = -2

Query: 692 HKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIESVLKH 513
           H     + L+ +      K  +       N D +S   +      +RDD   ++ S L+H
Sbjct: 379 HLSNMSQKLSRVNEELVLKTKIATASSNANTDLRSRVDISESKLKKRDDKLKRVSSQLEH 438

Query: 512 VK----KLNTNSEKFMVTHETFKNDVGNRFEQ---FELRLNELDAKLNMLQ-----SAEK 369
           +K    +  + +E  +V  +T +     + +Q    + ++N+L+ +L  L      S E 
Sbjct: 439 LKHNYEEEKSMNENLLVRIQTLEKQNTTKSDQIVSMQFQINDLNEQLRDLMFTISASQEI 498

Query: 368 LKTAIVTESKNGTVTFPRDIT 306
            K     E +NGT+  P + T
Sbjct: 499 QKMGQSEELQNGTIVLPNNST 519


>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
           Ups1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 222 KMSLLAQNKSE-FDAVVDAFRKYGQMLVFGNVARKR 326
           K +LL + KS+ FD  V+AF KYG+   F  V R +
Sbjct: 2   KTALLLKTKSQPFDPYVEAFEKYGRDTAFIPVLRHK 37


>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 23/108 (21%), Positives = 45/108 (41%)
 Frame = -2

Query: 704 EIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIES 525
           E IF K  S +  N + + F   Q      M   FD   N +  ++  GE  +++ ++  
Sbjct: 109 ERIFSKMDSMQ--NDMNSRFDAMQNE----MNSRFDTVQNEMTSMK--GEMAEMKVEMVE 160

Query: 524 VLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQ 381
           + +   +LNT  +      E     +  RF   + R N +D + + ++
Sbjct: 161 MKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRFNSIDRRFDSME 208


>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -2

Query: 677 KRDLNSLGALFATKQGLLKILMR--LNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKK 504
           +R +N++     T QG +  +    +NF NK N L       E  DLR K   V+  V  
Sbjct: 125 QRTINTMQGTMNTMQGTMNTMQENMINFTNKVNTLDMRSVRAENRDLR-KGAYVISPVPF 183

Query: 503 LNTNS 489
           +N N+
Sbjct: 184 INGNN 188


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/71 (19%), Positives = 33/71 (46%)
 Frame = -2

Query: 698 IFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIESVL 519
           I  ++++  D  SL         ++ ++   NF +++    H  ++  + +LR   + + 
Sbjct: 247 IIDQEETSSDDESLSKEIVNSNPIMCMVCNKNFRSQNQLENHENSKKHKKNLRKMNQEIK 306

Query: 518 KHVKKLNTNSE 486
           KH K+   N+E
Sbjct: 307 KHAKEAQKNAE 317


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
 Frame = -2

Query: 551 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFK-----NDVGNRFEQFELRLNELDAKLNM 387
           D+  + ++ ++K  KKL  ++E+    H T K     N +G  F + ++ L  +D KL++
Sbjct: 208 DENGEILKRLVKKEKKLKNDNERLENEHRTEKLNVNANSLGKSFVKHDIPLPPVDLKLDI 267

Query: 386 LQ 381
            +
Sbjct: 268 FE 269


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 704 EIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSN 585
           ++ FH Q+ KRD+ +L  ++ T    L  L+   F + +N
Sbjct: 79  QLEFHAQEGKRDVTNLTCVYGTSPQQLDRLITREFSSDAN 118


>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 323

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 23/108 (21%), Positives = 45/108 (41%)
 Frame = -2

Query: 704 EIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIES 525
           E IF K  S +  N + + F   Q      M   FD   N +  ++  GE  +++ ++  
Sbjct: 109 ERIFSKMDSMQ--NDMNSRFDAMQNE----MNSRFDAVQNEMTSMK--GEMAEMKVEMVE 160

Query: 524 VLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQ 381
           + +   +LNT  +      E     +  RF   + R N +D + + ++
Sbjct: 161 MKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRFNSIDRRFDSME 208


>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = -2

Query: 149 AIQCINEKLYDKHYKIRKIAKRVI 78
           A++CIN+K +D+H KI+K+   V+
Sbjct: 57  ALKCINKKKHDEH-KIKKLRNEVL 79


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -2

Query: 527 SVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVT 348
           + L H+  L   +      H TFK++V N    +EL  +EL A   +  S+    + I T
Sbjct: 350 AALNHISALEKETISHTDLHHTFKHEV-NSSNNYELTNDELAASSPLYTSSSVPPSHITT 408

Query: 347 ES 342
            S
Sbjct: 409 GS 410


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 24  LQYFLYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFF 131
           L  F   LF  +  T+HV   F  +  F  F+ +FF
Sbjct: 246 LAAFYRGLFPSLFGTLHVGIQFPLYEYFKSFLDDFF 281


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = -2

Query: 599 DNKSNALLHLQTEGER--DDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQF 426
           D +SN  +H     ++  +DLR KI  + + V K+N   E   +T E  K  + +  +Q 
Sbjct: 588 DIESNLDIHKDKLDQQAVEDLRSKITDLRETVAKVNAGDEG--ITSEDMKKKI-DEIQQL 644

Query: 425 ELRLNE 408
            L++ E
Sbjct: 645 SLKVFE 650


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 23/71 (32%), Positives = 30/71 (42%)
 Frame = -2

Query: 608 LNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQ 429
           +N     N+ +HL        L DK +  L  + K  TN+ KF V  ET    +G    Q
Sbjct: 567 INLLRDENSYVHLNVISAVVSLCDKYDDSLIRLLKEYTNTNKFTV-DETLL--IGQAIYQ 623

Query: 428 FELRLNELDAK 396
              R  EL AK
Sbjct: 624 TMERQGELVAK 634


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = +3

Query: 345 FRYDGGFQFFGR---LQHVKFGVEFVQTQFKLLK--PVAHIVLERFVGDHKFFAVCIQ 503
           + YD  FQ       +Q+    ++ +Q  FK     PVA  +LER+V   K +  CI+
Sbjct: 253 YYYDLAFQNVNNDSFVQNYGKALQHIQRAFKTRNNDPVASSILERYVYSKKNYEGCIK 310


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 26/118 (22%), Positives = 52/118 (44%)
 Frame = -2

Query: 683 KSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKK 504
           + KR   SL    + K+ L K L   N D+   A  +   + E++ L + ++S+ +  + 
Sbjct: 330 REKRRARSLEERMS-KEMLTK-LGESNVDDGMAASRYDTVKREKERLSEHLKSLQEQYEH 387

Query: 503 LNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGT 330
           + +  +  ++  E++   +GN+  +    LNE       LQ+    K + VT     T
Sbjct: 388 IQSVYKNVLLDRESYIMRLGNKISENNELLNENRVLKEKLQTYLDKKESNVTSKIKST 445


>SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 144

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 176 DGVHPNPLLAIQCINEKLYD 117
           D ++PN L  ++ INEK +D
Sbjct: 5   DAINPNNLKILEVINEKCFD 24


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = -2

Query: 668  LNSLGALFA-TKQGLLKI----LMRLNFDNKSNALLHLQTEGERDDLRDKIESVL 519
            + S G L A T+ G+ +     LMR +F+     L+     GE+DD +   E+++
Sbjct: 1381 MTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKDDCKGISENIM 1435


>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 386 LQSAEKLKTAIVTESKNGTVTFPRDITKHQHLAIFSERID--DRIKLAF 246
           + +A  LK+ I  ESK      P D+T+ Q   +F + I    R+ LA+
Sbjct: 41  VNTASALKSVISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAY 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,825
Number of Sequences: 5004
Number of extensions: 57949
Number of successful extensions: 216
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -