Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13i02
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    31   0.16 
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo...    28   1.5  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    27   2.0  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    27   3.5  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    26   6.1  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    25   8.0  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    25   8.0  

>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -1

Query: 478 VPLTKPSPEKPIRNPS*RDT*MENQQDWPSEPERCCTVSWRPHPRSGTIPCIRR 317
           VP   PSP  P+ +   R    + QQDW   P      +W+ +P+  TIP  +R
Sbjct: 222 VPRGPPSPPPPVLHSPPRKVSAQEQQDWQIPPS---ISNWK-NPKGYTIPLDKR 271


>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
           Agn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = -1

Query: 286 YRYISGKLGLIAVAMLSTHYYFKYLGNDWTKKGGWKVLKTKPMVLPGQPGFPFKSEKTDS 107
           Y+ ++  LG + VA +S  +Y      +W  K  W ++     +L  QP        T +
Sbjct: 201 YQNLANSLGKLYVAPVSPWFYTHLSYKNWAYKSDWLIIDRWNEMLSVQP--DMIEVLTWN 258

Query: 106 DYAERKFKSSV 74
           DY E  +  ++
Sbjct: 259 DYGESHYIGNI 269


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 156 FFLDNLDSHSNLRKPILITLKGNSRALLFK 67
           FF+D+LDSH N    IL +L   S   + +
Sbjct: 311 FFIDSLDSHPNNPTGILYSLDSESNTFVIR 340


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 602 SRNHKPISLFERSSPGAPHRSHL 670
           SR+H+ +S  + SSP  P R HL
Sbjct: 45  SRSHRSLSSVDVSSPSLPLREHL 67


>SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1079

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 584  GRRTSVSRNHKPISLFERSSPGAPHRSHL-VSGIWVLQGR 700
            GR  S+  NHKP+   ++   GA     L  SG  +L GR
Sbjct: 993  GRVASLEMNHKPVDKVKKGQAGAGVAMKLESSGSQILFGR 1032


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 387 SQSAAARSPGALTLGQAPSPVYGAQHRENNVLHIIDIYLEN 265
           S S   R P  L L      ++   HRE NVL+ ++  ++N
Sbjct: 85  SLSLQVRPPTTLELSFTDVDMFLKYHREKNVLNSLEALVQN 125


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -2

Query: 294 LHIIDIYLENLV*SLWLCYQHITTLNI*ETTGQRRVVGKY*KPNQWFFLD-NLDSHSNLR 118
           + I ++  + LV +L    + +++L++  ++G   ++G Y K   WF LD +   + NLR
Sbjct: 592 VRIYNLVKQELVKTLLTGVKWVSSLSV-HSSGDHVIIGSYDKRLCWFDLDFSSKPYKNLR 650


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,046,471
Number of Sequences: 5004
Number of extensions: 64851
Number of successful extensions: 195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)