Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13i02
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0081 - 18924353-18924462,18925068-18925187,18925569-189260... 31 0.90
05_06_0043 + 25143513-25143866,25144010-25144191,25144284-251443... 31 0.90
08_01_1039 + 10548266-10548619,10548734-10549213,10549408-105495... 30 2.1
06_01_0341 - 2456637-2456996 30 2.1
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 30 2.1
02_02_0067 - 6509478-6509483,6510742-6511270,6512066-6512070,651... 29 2.7
01_06_0483 + 29701674-29702180 29 2.7
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 29 4.8
01_06_1258 + 35806557-35806932,35807517-35807679,35807789-358078... 29 4.8
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 29 4.8
06_03_0723 + 23875008-23875204,23875311-23875576,23877166-238772... 28 6.3
01_01_0884 - 6956337-6956431,6956514-6957651 28 6.3
11_06_0543 + 24792110-24792229,24792316-24792521,24793770-247944... 28 8.4
03_06_0301 - 32974276-32974638,32974842-32974967,32975056-329751... 28 8.4
03_05_0430 - 24206526-24207710 28 8.4
>11_05_0081 -
18924353-18924462,18925068-18925187,18925569-18926086,
18927392-18927471,18927680-18927782,18928084-18928295,
18928392-18929210,18929331-18929444,18929935-18929983,
18930115-18930271,18930354-18930807,18930938-18931147
Length = 981
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -1
Query: 259 LIAVAMLSTHYYFKYLGNDWTKKGGWKVLKTKPMVL 152
+I A+L H Y+ +L DW KK W L PM L
Sbjct: 578 VIVYALLIVHGYYLFLTKDWYKKTTWMYLAV-PMFL 612
>05_06_0043 +
25143513-25143866,25144010-25144191,25144284-25144374,
25144452-25144568,25144922-25144976,25145008-25145093,
25145190-25145300,25145564-25145608,25145695-25145740,
25146078-25146152,25146902-25146971,25147128-25147437,
25147778-25147851,25147996-25148151,25148416-25148539
Length = 631
Score = 31.1 bits (67), Expect = 0.90
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Frame = -1
Query: 400 DWPSEPERCCTVSWRPH-PRSGTIPCIRRPTQGEQRAAH---YRYISGKLGLIAVAMLST 233
D S PE W P P +G P R+P QRAA Y + LG + + +
Sbjct: 50 DADSPPEGSAVAGWAPPGPYTGRDPAARKPAWLRQRAAQGEKYARLRESLGELKLNTVCV 109
Query: 232 HYYFKYLGNDWTKKGG 185
+G W GG
Sbjct: 110 EAQCPNIGECWDGGGG 125
>08_01_1039 +
10548266-10548619,10548734-10549213,10549408-10549510,
10549550-10550175
Length = 520
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -1
Query: 181 KVLKTKPMVLPGQPGFPFKSEKTDSDYAERKFKSSVI*KQFN*QTV*FSRKLNIFNI 11
K L TK +P QP F ++KT ++A + I Q N + F+ K N+ +
Sbjct: 30 KTLPTKKPAVPAQPTFKTMADKTLREFAALSANNMAIGPQINMGDMDFNLKSNLITM 86
>06_01_0341 - 2456637-2456996
Length = 119
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 620 ISLFERSSPGAPHRSHLVSGIWVL 691
+S FER+ PG+P R L +W L
Sbjct: 53 LSAFERAPPGSPARGRLKRAVWAL 76
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 307 PVLGAVYRGWCLTEGEGARRPCSSALAPRASPVGS 411
PV+ + G + G G R +SA+AP A+P+G+
Sbjct: 802 PVVSTITMGKAMGTGSGIGRAGASAMAPPANPMGA 836
>02_02_0067 -
6509478-6509483,6510742-6511270,6512066-6512070,
6512523-6512651,6512769-6512879,6513794-6513906,
6515036-6515096
Length = 317
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 620 ISLFERSSPGAPHRSHLVSGIWVL 691
+ LFE++ P +P R H+ + +W+L
Sbjct: 243 LRLFEKTPPESPRRHHIKTAVWLL 266
>01_06_0483 + 29701674-29702180
Length = 168
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 620 ISLFERSSPGAPHRSHLVSGIWVL 691
+ LFE +P RSH+ +G+WVL
Sbjct: 84 LRLFESLPRSSPRRSHVKAGVWVL 107
>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = -3
Query: 695 PEEPRSPKPDVSDEAPLDLTVRKEISVCDFARRSFADPSDYVRTQLIL 552
PE+PR PK D+ D+ +++ +E D + F P D +++ ++
Sbjct: 1656 PEKPRQPKADLDDDQEINIIFDEESGSDD--KLPFPQPDDSLQSPPVI 1701
>01_06_1258 +
35806557-35806932,35807517-35807679,35807789-35807837,
35807943-35808866,35808954-35809049,35809142-35809257,
35809345-35809447,35809570-35809658,35809750-35809900,
35809995-35810141,35810238-35810366,35810451-35810529,
35810616-35810725
Length = 843
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 259 LIAVAMLSTHYYFKYLGNDWTKKGGWKVL 173
++A +L H YF +L +W KK W L
Sbjct: 481 VLAYVLLVVHSYFIFLTREWYKKTTWMYL 509
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 548 QSQEFLATARDSGTDSDDSAGRLSPADEA 462
+ ++F+A DSG+ +DDS G S A E+
Sbjct: 526 EDEDFVADKDDSGSPTDDSGGEDSDASES 554
>06_03_0723 +
23875008-23875204,23875311-23875576,23877166-23877274,
23877577-23878212,23878328-23878573,23878669-23878834,
23878863-23879076,23879580-23880097,23880617-23880683,
23882131-23882215,23882292-23882367,23882593-23882756,
23883088-23883217,23883314-23883430,23883505-23883600,
23883732-23884009,23886571-23886794,23886935-23887011,
23887103-23887145,23887231-23887288,23888371-23888410,
23888891-23889418
Length = 1444
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/44 (22%), Positives = 22/44 (50%)
Frame = +3
Query: 561 LSPHVVTRVGERASREITNRYLFSNGQVQGRLIAHIWFRGSGFF 692
++P ++T R +F+ +V+G+ ++ W RG F+
Sbjct: 342 VAPWILTVAASTMDRAFPAHLVFNRNRVEGQSLSPTWLRGKTFY 385
>01_01_0884 - 6956337-6956431,6956514-6957651
Length = 410
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +1
Query: 349 GEGARRPCSSALAPRASPVGSPFMYLFMRDFL*AFPVRASSAGLSRPAESSESVPESLAV 528
G G+ P ++ + +PF+ LF RD + AG +RPA + PE+ A+
Sbjct: 155 GGGSPAPKTNRFLIKFRVDDAPFVSLFTRDNSSRTSDAGAGAGAARPAVQALQTPEAAAI 214
>11_06_0543 +
24792110-24792229,24792316-24792521,24793770-24794462,
24794538-24794717,24794793-24795084,24795166-24795375
Length = 566
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 534 ELLGLPQDELSPHVVTRVGERASREITNRYLFSNG 638
E L LP +L PHV + E+ I N ++SNG
Sbjct: 497 EKLKLPTSKLLPHVCLGLAEQLCGFIFNHIIWSNG 531
>03_06_0301 -
32974276-32974638,32974842-32974967,32975056-32975131,
32975935-32976130,32976666-32976759,32977773-32978195
Length = 425
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/59 (30%), Positives = 24/59 (40%)
Frame = +2
Query: 530 PGTPGTASG*AESSRSHSGRRTSVSRNHKPISLFERSSPGAPHRSHLVSGIWVLQGRPS 706
P PG S + SH G S+ N P+ S P S LV + VL +P+
Sbjct: 148 PERPGAGSSLLNADVSHIGAPNSIGGNATPVQNM-LSGPSGGSGSQLVQNVDVLVKQPT 205
>03_05_0430 - 24206526-24207710
Length = 394
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = -1
Query: 427 RDT*MENQQDWPSE--PERCCTVSWRPHPRSGTIPCIRRP 314
RD M DWP + PE C + RP P CI P
Sbjct: 353 RDDRMNCIPDWPHQRSPEECIAFAHRPPPHCAADGCIVIP 392
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,234,023
Number of Sequences: 37544
Number of extensions: 453141
Number of successful extensions: 1495
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1495
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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