Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13i02
(709 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC065286-1|AAH65286.1| 319|Homo sapiens SNW1 protein protein. 33 1.3
U51432-1|AAC15912.1| 536|Homo sapiens nuclear protein Skip prot... 30 9.3
BT020061-1|AAV38864.1| 536|Homo sapiens SKI-interacting protein... 30 9.3
BT020060-1|AAV38863.1| 536|Homo sapiens SKI-interacting protein... 30 9.3
BC108903-1|AAI08904.1| 536|Homo sapiens SNW domain containing 1... 30 9.3
BC105585-1|AAI05586.1| 288|Homo sapiens SNW1 protein protein. 30 9.3
BC046105-1|AAH46105.2| 531|Homo sapiens SNW1 protein protein. 30 9.3
BC040112-1|AAH40112.1| 531|Homo sapiens SNW1 protein protein. 30 9.3
AF045184-1|AAC31697.1| 536|Homo sapiens nuclear receptor coacti... 30 9.3
AC008372-1|AAF23325.1| 536|Homo sapiens nuclear receptor coacti... 30 9.3
>BC065286-1|AAH65286.1| 319|Homo sapiens SNW1 protein protein.
Length = 319
Score = 32.7 bits (71), Expect = 1.3
Identities = 21/79 (26%), Positives = 37/79 (46%)
Frame = -1
Query: 478 VPLTKPSPEKPIRNPS*RDT*MENQQDWPSEPERCCTVSWRPHPRSGTIPCIRRPTQGEQ 299
+P PSP P+ + R ++ QQ+W P C +W+ + + TIP +R +
Sbjct: 218 IPRGPPSPPAPVMHSPSRKMTVKEQQEWKIPP---CISNWK-NAKGYTIPLDKR-LAADG 272
Query: 298 RAAHYRYISGKLGLIAVAM 242
R +I+G +A A+
Sbjct: 273 RGLQTVHINGNFAKLAEAL 291
>U51432-1|AAC15912.1| 536|Homo sapiens nuclear protein Skip
protein.
Length = 536
Score = 29.9 bits (64), Expect = 9.3
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -1
Query: 478 VPLTKPSPEKPIRNPS*RDT*MENQQDWPSEPERCCTVSWRPHPRSGTIPCIRR 317
+P PSP P+ + R ++ QQ+W P C +W+ + + TIP +R
Sbjct: 218 IPRGPPSPPAPVMHSPSRKMTVKEQQEWKIPP---CISNWK-NAKGYTIPLDKR 267
>BT020061-1|AAV38864.1| 536|Homo sapiens SKI-interacting protein
protein.
Length = 536
Score = 29.9 bits (64), Expect = 9.3
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -1
Query: 478 VPLTKPSPEKPIRNPS*RDT*MENQQDWPSEPERCCTVSWRPHPRSGTIPCIRR 317
+P PSP P+ + R ++ QQ+W P C +W+ + + TIP +R
Sbjct: 218 IPRGPPSPPAPVMHSPSRKMTVKEQQEWKIPP---CISNWK-NAKGYTIPLDKR 267
>BT020060-1|AAV38863.1| 536|Homo sapiens SKI-interacting protein
protein.
Length = 536
Score = 29.9 bits (64), Expect = 9.3
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -1
Query: 478 VPLTKPSPEKPIRNPS*RDT*MENQQDWPSEPERCCTVSWRPHPRSGTIPCIRR 317
+P PSP P+ + R ++ QQ+W P C +W+ + + TIP +R
Sbjct: 218 IPRGPPSPPAPVMHSPSRKMTVKEQQEWKIPP---CISNWK-NAKGYTIPLDKR 267
>BC108903-1|AAI08904.1| 536|Homo sapiens SNW domain containing 1
protein.
Length = 536
Score = 29.9 bits (64), Expect = 9.3
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -1
Query: 478 VPLTKPSPEKPIRNPS*RDT*MENQQDWPSEPERCCTVSWRPHPRSGTIPCIRR 317
+P PSP P+ + R ++ QQ+W P C +W+ + + TIP +R
Sbjct: 218 IPRGPPSPPAPVMHSPSRKMTVKEQQEWKIPP---CISNWK-NAKGYTIPLDKR 267
>BC105585-1|AAI05586.1| 288|Homo sapiens SNW1 protein protein.
Length = 288
Score = 29.9 bits (64), Expect = 9.3
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -1
Query: 478 VPLTKPSPEKPIRNPS*RDT*MENQQDWPSEPERCCTVSWRPHPRSGTIPCIRR 317
+P PSP P+ + R ++ QQ+W P C +W+ + + TIP +R
Sbjct: 218 IPRGPPSPPAPVMHSPSRKMTVKEQQEWKIPP---CISNWK-NAKGYTIPLDKR 267
>BC046105-1|AAH46105.2| 531|Homo sapiens SNW1 protein protein.
Length = 531
Score = 29.9 bits (64), Expect = 9.3
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -1
Query: 478 VPLTKPSPEKPIRNPS*RDT*MENQQDWPSEPERCCTVSWRPHPRSGTIPCIRR 317
+P PSP P+ + R ++ QQ+W P C +W+ + + TIP +R
Sbjct: 213 IPRGPPSPPAPVMHSPSRKMTVKEQQEWKIPP---CISNWK-NAKGYTIPLDKR 262
>BC040112-1|AAH40112.1| 531|Homo sapiens SNW1 protein protein.
Length = 531
Score = 29.9 bits (64), Expect = 9.3
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -1
Query: 478 VPLTKPSPEKPIRNPS*RDT*MENQQDWPSEPERCCTVSWRPHPRSGTIPCIRR 317
+P PSP P+ + R ++ QQ+W P C +W+ + + TIP +R
Sbjct: 213 IPRGPPSPPAPVMHSPSRKMTVKEQQEWKIPP---CISNWK-NAKGYTIPLDKR 262
>AF045184-1|AAC31697.1| 536|Homo sapiens nuclear receptor
coactivator NCoA-62 protein.
Length = 536
Score = 29.9 bits (64), Expect = 9.3
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -1
Query: 478 VPLTKPSPEKPIRNPS*RDT*MENQQDWPSEPERCCTVSWRPHPRSGTIPCIRR 317
+P PSP P+ + R ++ QQ+W P C +W+ + + TIP +R
Sbjct: 218 IPRGPPSPPAPVMHSPSRKMTVKEQQEWKIPP---CISNWK-NAKGYTIPLDKR 267
>AC008372-1|AAF23325.1| 536|Homo sapiens nuclear receptor
coactivator NCoA-62 protein.
Length = 536
Score = 29.9 bits (64), Expect = 9.3
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -1
Query: 478 VPLTKPSPEKPIRNPS*RDT*MENQQDWPSEPERCCTVSWRPHPRSGTIPCIRR 317
+P PSP P+ + R ++ QQ+W P C +W+ + + TIP +R
Sbjct: 218 IPRGPPSPPAPVMHSPSRKMTVKEQQEWKIPP---CISNWK-NAKGYTIPLDKR 267
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,403,463
Number of Sequences: 237096
Number of extensions: 2589879
Number of successful extensions: 7407
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7405
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -