Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13i02
(709 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT001463-1|AAN71218.1| 167|Drosophila melanogaster GM23292p pro... 75 1e-13
AE014134-2629|AAF53480.1| 167|Drosophila melanogaster CG13240-P... 75 1e-13
X15087-1|CAA33195.1| 883|Drosophila melanogaster protein ( Dros... 38 0.018
M37083-1|AAA28494.1| 883|Drosophila melanogaster E74B protein p... 38 0.018
BT003745-1|AAO41406.1| 883|Drosophila melanogaster SD03570p pro... 38 0.018
AE014296-2936|AAX52740.1| 883|Drosophila melanogaster CG32180-P... 38 0.018
AE014296-2935|AAF49324.1| 883|Drosophila melanogaster CG32180-P... 38 0.018
BT025042-1|ABE73213.1| 2313|Drosophila melanogaster LD27386p pro... 31 2.0
AE014298-1909|AAF48273.2| 2362|Drosophila melanogaster CG1716-PA... 31 2.0
X64536-1|CAA45834.1| 547|Drosophila melanogaster puff specific ... 30 3.5
BT023709-1|AAY85109.1| 138|Drosophila melanogaster HL02152p pro... 30 3.5
AY113364-1|AAM29369.1| 547|Drosophila melanogaster LD22701p pro... 30 3.5
AE014298-1274|AAF46444.2| 547|Drosophila melanogaster CG8264-PA... 30 3.5
AE014134-2630|AAN10909.1| 138|Drosophila melanogaster CG13240-P... 30 3.5
AY070971-1|AAL48593.1| 141|Drosophila melanogaster RE06996p pro... 29 4.7
AE013599-3602|AAM68251.1| 141|Drosophila melanogaster CG30411-P... 29 4.7
AE014297-2547|AAF55570.1| 1194|Drosophila melanogaster CG14304-P... 29 6.2
>BT001463-1|AAN71218.1| 167|Drosophila melanogaster GM23292p
protein.
Length = 167
Score = 74.9 bits (176), Expect = 1e-13
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Frame = -1
Query: 325 IRRPTQGEQRAAHYRYISGKLGLIAVAMLSTHYYFKYLGNDWTKKGGWKVLKTKPMVLPG 146
+ P G QRA R+ +GK L + + YYFKY NDWT+KGGW+V+ ++ +PG
Sbjct: 80 VLEPVLGFQRAYTVRFWTGKALLALTGIYAGAYYFKYNQNDWTRKGGWRVIHSRKQCVPG 139
Query: 145 QPGFPFKSEKT-DSDYAERKFKSS 77
G+P S+++ SDYA R F S
Sbjct: 140 DEGYPKVSDRSAPSDYAARGFNES 163
>AE014134-2629|AAF53480.1| 167|Drosophila melanogaster CG13240-PA,
isoform A protein.
Length = 167
Score = 74.9 bits (176), Expect = 1e-13
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Frame = -1
Query: 325 IRRPTQGEQRAAHYRYISGKLGLIAVAMLSTHYYFKYLGNDWTKKGGWKVLKTKPMVLPG 146
+ P G QRA R+ +GK L + + YYFKY NDWT+KGGW+V+ ++ +PG
Sbjct: 80 VLEPVLGFQRAYTVRFWTGKALLALTGIYAGAYYFKYNQNDWTRKGGWRVIHSRKQCVPG 139
Query: 145 QPGFPFKSEKT-DSDYAERKFKSS 77
G+P S+++ SDYA R F S
Sbjct: 140 DEGYPKVSDRSAPSDYAARGFNES 163
>X15087-1|CAA33195.1| 883|Drosophila melanogaster protein (
Drosophila melanogaster74E gene. ).
Length = 883
Score = 37.5 bits (83), Expect = 0.018
Identities = 23/43 (53%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Frame = -3
Query: 515 SGTDSDDSAG------RLSPADEALTGKAYKKSLMKRYMNGEP 405
SGT+SDDSA RL P +A AYKKSLMKRY P
Sbjct: 309 SGTESDDSAQCERARMRLKPERKAERSAAYKKSLMKRYYTEIP 351
>M37083-1|AAA28494.1| 883|Drosophila melanogaster E74B protein
protein.
Length = 883
Score = 37.5 bits (83), Expect = 0.018
Identities = 23/43 (53%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Frame = -3
Query: 515 SGTDSDDSAG------RLSPADEALTGKAYKKSLMKRYMNGEP 405
SGT+SDDSA RL P +A AYKKSLMKRY P
Sbjct: 309 SGTESDDSAQCERARMRLKPERKAERSAAYKKSLMKRYYTEIP 351
>BT003745-1|AAO41406.1| 883|Drosophila melanogaster SD03570p
protein.
Length = 883
Score = 37.5 bits (83), Expect = 0.018
Identities = 23/43 (53%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Frame = -3
Query: 515 SGTDSDDSAG------RLSPADEALTGKAYKKSLMKRYMNGEP 405
SGT+SDDSA RL P +A AYKKSLMKRY P
Sbjct: 309 SGTESDDSAQCERARMRLKPERKAERSAAYKKSLMKRYYTEIP 351
>AE014296-2936|AAX52740.1| 883|Drosophila melanogaster CG32180-PD,
isoform D protein.
Length = 883
Score = 37.5 bits (83), Expect = 0.018
Identities = 23/43 (53%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Frame = -3
Query: 515 SGTDSDDSAG------RLSPADEALTGKAYKKSLMKRYMNGEP 405
SGT+SDDSA RL P +A AYKKSLMKRY P
Sbjct: 309 SGTESDDSAQCERARMRLKPERKAERSAAYKKSLMKRYYTEIP 351
>AE014296-2935|AAF49324.1| 883|Drosophila melanogaster CG32180-PB,
isoform B protein.
Length = 883
Score = 37.5 bits (83), Expect = 0.018
Identities = 23/43 (53%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Frame = -3
Query: 515 SGTDSDDSAG------RLSPADEALTGKAYKKSLMKRYMNGEP 405
SGT+SDDSA RL P +A AYKKSLMKRY P
Sbjct: 309 SGTESDDSAQCERARMRLKPERKAERSAAYKKSLMKRYYTEIP 351
>BT025042-1|ABE73213.1| 2313|Drosophila melanogaster LD27386p
protein.
Length = 2313
Score = 30.7 bits (66), Expect = 2.0
Identities = 24/92 (26%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Frame = -3
Query: 689 EPRSPKPDVSD-EAPLDLTV-RKEISVCDFARRSFADPSDYVRT-QLILRQSQEFLATAR 519
+ ++P P++ + E P+ TV +KE ++ + AR S A VR ++ + + T
Sbjct: 682 QKQTPLPEMKEPEKPVAETVSKKEKAMENPARSSPAIVDKKVRAGEMEKKVVKSTKGTVP 741
Query: 518 DSGTDSDDSAGRLSPADEALTGKAYKKSLMKR 423
+ DS S ++PA + +GK+ K++++K+
Sbjct: 742 EKKMDSKKSCAAVTPAKQKESGKSAKEAILKK 773
>AE014298-1909|AAF48273.2| 2362|Drosophila melanogaster CG1716-PA
protein.
Length = 2362
Score = 30.7 bits (66), Expect = 2.0
Identities = 24/92 (26%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Frame = -3
Query: 689 EPRSPKPDVSD-EAPLDLTV-RKEISVCDFARRSFADPSDYVRT-QLILRQSQEFLATAR 519
+ ++P P++ + E P+ TV +KE ++ + AR S A VR ++ + + T
Sbjct: 731 QKQTPLPEMKEPEKPVAETVSKKEKAMENPARSSPAIVDKKVRAGEMEKKVVKSTKGTVP 790
Query: 518 DSGTDSDDSAGRLSPADEALTGKAYKKSLMKR 423
+ DS S ++PA + +GK+ K++++K+
Sbjct: 791 EKKMDSKKSCAAVTPAKQKESGKSAKEAILKK 822
>X64536-1|CAA45834.1| 547|Drosophila melanogaster puff specific
protein Bx42 protein.
Length = 547
Score = 29.9 bits (64), Expect = 3.5
Identities = 20/79 (25%), Positives = 37/79 (46%)
Frame = -1
Query: 478 VPLTKPSPEKPIRNPS*RDT*MENQQDWPSEPERCCTVSWRPHPRSGTIPCIRRPTQGEQ 299
+P PSP P+ + R ++ Q++W P C +W+ + + TIP +R +
Sbjct: 221 IPRGPPSPPAPVLHSPSRKVTVKEQKEWKIPP---CISNWK-NAKGYTIPLDKR-LAADG 275
Query: 298 RAAHYRYISGKLGLIAVAM 242
R +I+ K +A A+
Sbjct: 276 RGLQQVHINEKFAKMAEAL 294
>BT023709-1|AAY85109.1| 138|Drosophila melanogaster HL02152p
protein.
Length = 138
Score = 29.9 bits (64), Expect = 3.5
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 325 IRRPTQGEQRAAHYRYISGKLGLIAVAMLSTHYYFKYLGN--DWTK 194
+ P G QRA R+ +GK L + + YYFKY N +W++
Sbjct: 80 VLEPVLGFQRAYTVRFWTGKALLALTGIYAGAYYFKYNQNVSNWSR 125
>AY113364-1|AAM29369.1| 547|Drosophila melanogaster LD22701p
protein.
Length = 547
Score = 29.9 bits (64), Expect = 3.5
Identities = 20/79 (25%), Positives = 37/79 (46%)
Frame = -1
Query: 478 VPLTKPSPEKPIRNPS*RDT*MENQQDWPSEPERCCTVSWRPHPRSGTIPCIRRPTQGEQ 299
+P PSP P+ + R ++ Q++W P C +W+ + + TIP +R +
Sbjct: 221 IPRGPPSPPAPVLHSPSRKVTVKEQKEWKIPP---CISNWK-NAKGYTIPLDKR-LAADG 275
Query: 298 RAAHYRYISGKLGLIAVAM 242
R +I+ K +A A+
Sbjct: 276 RGLQQVHINEKFAKMAEAL 294
>AE014298-1274|AAF46444.2| 547|Drosophila melanogaster CG8264-PA
protein.
Length = 547
Score = 29.9 bits (64), Expect = 3.5
Identities = 20/79 (25%), Positives = 37/79 (46%)
Frame = -1
Query: 478 VPLTKPSPEKPIRNPS*RDT*MENQQDWPSEPERCCTVSWRPHPRSGTIPCIRRPTQGEQ 299
+P PSP P+ + R ++ Q++W P C +W+ + + TIP +R +
Sbjct: 221 IPRGPPSPPAPVLHSPSRKVTVKEQKEWKIPP---CISNWK-NAKGYTIPLDKR-LAADG 275
Query: 298 RAAHYRYISGKLGLIAVAM 242
R +I+ K +A A+
Sbjct: 276 RGLQQVHINEKFAKMAEAL 294
>AE014134-2630|AAN10909.1| 138|Drosophila melanogaster CG13240-PB,
isoform B protein.
Length = 138
Score = 29.9 bits (64), Expect = 3.5
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 325 IRRPTQGEQRAAHYRYISGKLGLIAVAMLSTHYYFKYLGN--DWTK 194
+ P G QRA R+ +GK L + + YYFKY N +W++
Sbjct: 80 VLEPVLGFQRAYTVRFWTGKALLALTGIYAGAYYFKYNQNVSNWSR 125
>AY070971-1|AAL48593.1| 141|Drosophila melanogaster RE06996p
protein.
Length = 141
Score = 29.5 bits (63), Expect = 4.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 363 PGALTLGQAPSPVYGAQHRENNVLHIIDIYL 271
PG + LG A S +G ++ +VLH D+YL
Sbjct: 33 PGQVLLGNAASVTWGHVNKYASVLHTEDVYL 63
>AE013599-3602|AAM68251.1| 141|Drosophila melanogaster CG30411-PA
protein.
Length = 141
Score = 29.5 bits (63), Expect = 4.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 363 PGALTLGQAPSPVYGAQHRENNVLHIIDIYL 271
PG + LG A S +G ++ +VLH D+YL
Sbjct: 33 PGQVLLGNAASVTWGHVNKYASVLHTEDVYL 63
>AE014297-2547|AAF55570.1| 1194|Drosophila melanogaster CG14304-PA
protein.
Length = 1194
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 593 TSVSRNHKPISLFERSSPGAPHRSHL 670
++V H+P LF S G PHR HL
Sbjct: 402 SNVRLRHRPRPLFSISESGRPHRHHL 427
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,427,679
Number of Sequences: 53049
Number of extensions: 752047
Number of successful extensions: 2411
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2406
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3128965752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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