Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13i02
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68303-4|CAA92637.1|  210|Caenorhabditis elegans Hypothetical pr...    32   0.35 
AC084152-4|AAR85899.1|  753|Caenorhabditis elegans Hypothetical ...    30   1.4  
AC084152-3|AAK39314.2|  772|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z74045-1|CAA98552.1|  535|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U80030-4|AAG24162.2|  370|Caenorhabditis elegans Serpentine rece...    29   4.3  
U80030-6|AAG24164.1|  367|Caenorhabditis elegans Serpentine rece...    28   5.7  
AF077540-5|AAC26308.1|  417|Caenorhabditis elegans C-type lectin...    28   5.7  
Z70310-3|CAA94365.1|  506|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AF101309-5|ABD94097.1|  543|Caenorhabditis elegans Hypothetical ...    28   7.5  
AF101309-4|AAV58863.1|  669|Caenorhabditis elegans Hypothetical ...    28   7.5  
AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical ...    28   7.5  
AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical ...    28   7.5  
AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4 ho...    28   7.5  
AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4 ho...    28   7.5  

>Z68303-4|CAA92637.1|  210|Caenorhabditis elegans Hypothetical
           protein ZK809.3 protein.
          Length = 210

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -1

Query: 319 RPTQGEQRAAHYRYISGKLGLIAVAMLSTHYYFKYLGNDWTKKGGWKVLKTKPMV 155
           +PT G       R  + KL +  V + + +YY+KY   DWT   G + +  K ++
Sbjct: 109 KPTFGVYYGTAIRVTAPKLLMAFVVVQTAYYYWKYEVKDWTHLRGLESMPQKEVI 163


>AC084152-4|AAR85899.1|  753|Caenorhabditis elegans Hypothetical
           protein Y102A11A.2b protein.
          Length = 753

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = -3

Query: 683 RSPKPDVSDEAPLDLTVRKEISVCDFARRSFADPSDYVRTQLILRQSQ---EFLATARDS 513
           R+P  +V +  P+   V   +   + +R S+++PS  V T   ++QS     +L T + S
Sbjct: 331 RAPPAEVRETLPMSSQVSTFLRGNESSRHSYSNPSTKVTTTPPIQQSHLGTNYLTTVQSS 390

Query: 512 GTDSDDSAGR 483
             D   S  R
Sbjct: 391 NLDRSPSPSR 400


>AC084152-3|AAK39314.2|  772|Caenorhabditis elegans Hypothetical
           protein Y102A11A.2a protein.
          Length = 772

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = -3

Query: 683 RSPKPDVSDEAPLDLTVRKEISVCDFARRSFADPSDYVRTQLILRQSQ---EFLATARDS 513
           R+P  +V +  P+   V   +   + +R S+++PS  V T   ++QS     +L T + S
Sbjct: 331 RAPPAEVRETLPMSSQVSTFLRGNESSRHSYSNPSTKVTTTPPIQQSHLGTNYLTTVQSS 390

Query: 512 GTDSDDSAGR 483
             D   S  R
Sbjct: 391 NLDRSPSPSR 400


>Z74045-1|CAA98552.1|  535|Caenorhabditis elegans Hypothetical
           protein T27F2.1 protein.
          Length = 535

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = -1

Query: 478 VPLTKPSPEKPIRNPS*RDT*MENQQDWPSEPERCCTVSWRPHPRSGTIPCIRRPTQGEQ 299
           +P   PSP  P+ +   R    ++Q DW   P   C  +W+ +P+  T+   +R    + 
Sbjct: 221 IPRAPPSPPAPVMHSPPRKMTAKDQNDWKIPP---CISNWK-NPKGFTVGLDKR-LAADG 275

Query: 298 RAAHYRYISGKLGLIAVAM 242
           R     +I+     +A A+
Sbjct: 276 RGLQQTHINENFAKLADAL 294


>U80030-4|AAG24162.2|  370|Caenorhabditis elegans Serpentine
           receptor, class w protein120 protein.
          Length = 370

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +2

Query: 47  CLSIKLFLNNRALEFPFSVIRIGFL-RFEWESRLSRKNHWFGF 172
           C++I  F+    +EFP+  + +GFL  F+++S +SR   +FGF
Sbjct: 275 CVTITFFI----VEFPYG-LSLGFLWMFDYDSGISRILSYFGF 312


>U80030-6|AAG24164.1|  367|Caenorhabditis elegans Serpentine
           receptor, class w protein119 protein.
          Length = 367

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +2

Query: 47  CLSIKLFLNNRALEFPFSVIRIGFL-RFEWESRLSRKNHWFGF 172
           C++I  F+    +EFP+  + +GFL  F+++S +SR   +FGF
Sbjct: 277 CVTITFFI----VEFPYG-LSLGFLWMFDYDSGISRILSFFGF 314


>AF077540-5|AAC26308.1|  417|Caenorhabditis elegans C-type lectin
           protein 20 protein.
          Length = 417

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 638 SSPGAPHRSHLVSGIWVLQGRPSW 709
           +S  A +    + G+W L GRPSW
Sbjct: 201 ASTFAQNEQVFIGGMWTLSGRPSW 224


>Z70310-3|CAA94365.1|  506|Caenorhabditis elegans Hypothetical
           protein R11A8.3 protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 438 IPHEEIHEWRTNRTGPRSQSAAAR 367
           IPHEE+ EWR  +    S+ A A+
Sbjct: 449 IPHEELIEWRIRQAAKPSRKAFAK 472


>AF101309-5|ABD94097.1|  543|Caenorhabditis elegans Hypothetical
           protein H24G06.1e protein.
          Length = 543

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 607 KSQTDISFRTVKSRGASSLTSGFGDLGS 690
           +S T   F    SRG+SSL  G G +GS
Sbjct: 344 RSTTGSDFSPASSRGSSSLAMGSGPIGS 371


>AF101309-4|AAV58863.1|  669|Caenorhabditis elegans Hypothetical
           protein H24G06.1d protein.
          Length = 669

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 607 KSQTDISFRTVKSRGASSLTSGFGDLGS 690
           +S T   F    SRG+SSL  G G +GS
Sbjct: 470 RSTTGSDFSPASSRGSSSLAMGSGPIGS 497


>AF101309-2|AAL32230.1| 1601|Caenorhabditis elegans Hypothetical
            protein H24G06.1b protein.
          Length = 1601

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 607  KSQTDISFRTVKSRGASSLTSGFGDLGS 690
            +S T   F    SRG+SSL  G G +GS
Sbjct: 1402 RSTTGSDFSPASSRGSSSLAMGSGPIGS 1429


>AF101309-1|AAL32229.1| 1680|Caenorhabditis elegans Hypothetical
            protein H24G06.1a protein.
          Length = 1680

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 607  KSQTDISFRTVKSRGASSLTSGFGDLGS 690
            +S T   F    SRG+SSL  G G +GS
Sbjct: 1481 RSTTGSDFSPASSRGSSSLAMGSGPIGS 1508


>AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4
           homolog protein 1, isoformb protein.
          Length = 1420

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 560 AESSRSHSGRRTSVSRNHKPISLFERSSPGAPHRSHLVSGI 682
           AESS S S  R     NH+PI L+  +   AP ++  V  +
Sbjct: 116 AESSSSDSNDRVISHPNHRPILLYSTALSMAPQQNLSVESL 156


>AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4
           homolog protein 1, isoforma protein.
          Length = 1418

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 560 AESSRSHSGRRTSVSRNHKPISLFERSSPGAPHRSHLVSGI 682
           AESS S S  R     NH+PI L+  +   AP ++  V  +
Sbjct: 116 AESSSSDSNDRVISHPNHRPILLYSTALSMAPQQNLSVESL 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,948,057
Number of Sequences: 27780
Number of extensions: 381166
Number of successful extensions: 1111
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)