Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13i02
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.7  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   6.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   6.6  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    21   8.7  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   8.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.7  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 376 SALAPRASPVGSPFMYLFMRDFL 444
           S L PR+S  G PF Y +   FL
Sbjct: 210 SKLRPRSSFQGPPFTYRYGFSFL 232


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 299 LFSLCWAPY 325
           LF +CWAP+
Sbjct: 278 LFFICWAPF 286


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = +2

Query: 278 ISIMCSTLFSLCWAPY 325
           ++++   +F +CW PY
Sbjct: 261 MTVIIIAVFFICWTPY 276


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 707 RKAYPEEPRSPKPDVSDEAPLD 642
           R  Y  +PR P P +  EA L+
Sbjct: 73  RPVYIPQPRPPHPRLRREAELE 94



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 707 RKAYPEEPRSPKPDVSDEAPLD 642
           R  Y  +PR P P +  EA L+
Sbjct: 129 RPVYIPQPRPPHPRLRREAELE 150


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 611 HKPISLFERSSPGAPHRSHLVSGIW 685
           ++ + +FER+ P +PH  +L    W
Sbjct: 104 NRGLGVFERTEPLSPHLLNLEVERW 128


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 341 RHHPLYTAPNT 309
           RHHP Y  P T
Sbjct: 154 RHHPRYKRPRT 164


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 680 SPKPDVSDEAPLDLTVRKEISVCDFARRSFAD 585
           SP P  S   P +  +   I+  D ARRS A+
Sbjct: 659 SPTPAESTFIPEERRIYSPITFQDVARRSVAN 690


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,043
Number of Sequences: 438
Number of extensions: 4791
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)