Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13h24
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0539 + 3952039-3952219,3952295-3952984,3953115-3953191,395...    38   0.008
12_02_0868 - 23839077-23839382,23839626-23839935,23840003-238401...    28   6.5  
02_04_0343 - 22166148-22166318,22166422-22166465,22166563-221666...    28   6.5  
02_03_0272 - 17146578-17146691,17146806-17146926,17147260-171473...    28   6.5  

>01_01_0539 +
           3952039-3952219,3952295-3952984,3953115-3953191,
           3953356-3953931
          Length = 507

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = -2

Query: 612 PRHGLATVSHRIYGQNHRTQ---FAFVPAQEFYLHVYHHMGHH--ALSQSHHR 469
           P +        IYG +  TQ    A V AQE+Y H +HH+ HH  A +  HHR
Sbjct: 349 PEYATQAAGPAIYGAHPATQPHYTAAVAAQEYYHHHHHHLQHHPAAAALVHHR 401


>12_02_0868 -
           23839077-23839382,23839626-23839935,23840003-23840128,
           23840202-23840436,23840649-23840684,23841033-23841162,
           23841318-23841410,23841556-23841678,23841769-23841835,
           23841937-23842028,23842136-23842291
          Length = 557

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
 Frame = +3

Query: 477 ETEKVHGVPYGGKRVSKTLGLARTQIEFCGFVHKFYAKLLQVHVGGCV-------NGPF 632
           E +   G P G   + + L   R  + F G VH  Y +   V+ G CV       NGPF
Sbjct: 414 EEQGTFGEPMGRDTIEELLQKYRVDLAFYGHVHS-YERTCPVYQGQCVVNASDHYNGPF 471


>02_04_0343 -
           22166148-22166318,22166422-22166465,22166563-22166626,
           22166729-22167109,22167296-22167475,22167661-22167790,
           22167844-22167946,22168060-22168093,22168216-22168300,
           22168389-22168453,22168592-22168690,22168960-22169025,
           22169200-22169439
          Length = 553

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -3

Query: 395 FYNVFFILQCAMCRDHYMNVKGFLIYHIELIEIALDKEKYGTDITFVDSYQQETAGADAA 216
           F   F  L+ A C D   N+KG     + LI +++    Y  D   +D    +T+G    
Sbjct: 247 FVRWFPWLKTAACCDACANLKGAFFTAVLLIVVSMTVTMYLADEMPLDKQDVDTSGGGGC 306

Query: 215 AV 210
           AV
Sbjct: 307 AV 308


>02_03_0272 -
           17146578-17146691,17146806-17146926,17147260-17147365,
           17147469-17147551,17147688-17147815,17147897-17147983,
           17148064-17148174,17148502-17148669,17148753-17148837,
           17148921-17149037,17149127-17149203,17149299-17149370,
           17150538-17150634,17150750-17150952,17151115-17151217,
           17151324-17151391,17151461-17151514,17151595-17151704,
           17151982-17152060,17152171-17152233,17153410-17153529,
           17153913-17153969,17154071-17154187,17156426-17156476,
           17156591-17156689,17156787-17156935,17158090-17158312
          Length = 953

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 519 HVYHHMGHHALSQSHHRRYGVYARQKQSRFCHAAVENDEGAILQRI 382
           +V    G+H LS      +G++ R     FC+A  +ND     QRI
Sbjct: 621 YVSSDFGNHPLSHLMGSVFGMHDRDNVEVFCYALSQNDGTEWRQRI 666


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,634,084
Number of Sequences: 37544
Number of extensions: 438464
Number of successful extensions: 1156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)