Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13h24
(724 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025724-8|AAG23381.1| 460|Caenorhabditis elegans Hypothetical ... 30 1.9
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 29 2.5
U42835-6|AAA83589.2| 816|Caenorhabditis elegans Dehydrogenases,... 29 4.4
U70851-5|AAB09127.1| 305|Caenorhabditis elegans Hypothetical pr... 28 5.9
AL110478-3|CAB54348.1| 380|Caenorhabditis elegans Hypothetical ... 28 5.9
AC090999-6|AAK26143.2| 214|Caenorhabditis elegans Hypothetical ... 28 5.9
U41746-5|AAT81186.1| 492|Caenorhabditis elegans Innexin protein... 28 7.8
U41746-4|AAA83332.1| 559|Caenorhabditis elegans Innexin protein... 28 7.8
AF016420-7|AAB65303.1| 428|Caenorhabditis elegans Serpentine re... 28 7.8
>AC025724-8|AAG23381.1| 460|Caenorhabditis elegans Hypothetical
protein Y67D8C.2 protein.
Length = 460
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = -3
Query: 425 MQQLKTMKVLFYNVFFILQCAMCR----DHYMNVKGFLIYHIELIEIALDKEKYGTDI 264
M++LK ++ +++ + +CR DHY +K F+I ++ +E +KE Y I
Sbjct: 1 MKRLKLRTLISNEYYYVAEAEVCRAPLADHYKVLKNFIISYVRKLE--ENKELYSAGI 56
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Frame = -2
Query: 624 H*RIPRHGLATVSHRIYGQNHRTQFAFVPAQEFYLHVYHHMGHH--ALSQSHHRRYG 460
H H V HR +G++H T + E H HH HH HH +G
Sbjct: 390 HEHAAHHDEHGVHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHAPAHHGHHESHG 446
>U42835-6|AAA83589.2| 816|Caenorhabditis elegans Dehydrogenases,
short chain protein27 protein.
Length = 816
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = -3
Query: 557 LNLRSCQPKSFTYTFTTIWDTMHFLSLIIDDMV-YTRDKSSLDFVMQQLKTMKVLFYNVF 381
L L C P F+ F+++ F+S+++ + TR++ F++ +L ++ V FY+ F
Sbjct: 735 LPLEHCSPFGFSKYFSSLLLCSEFISIVLPLIKRRTRERIIRVFIISRL-SIFVHFYHDF 793
Query: 380 FIL 372
F+L
Sbjct: 794 FLL 796
>U70851-5|AAB09127.1| 305|Caenorhabditis elegans Hypothetical
protein M02B7.1 protein.
Length = 305
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 465 YGVYARQKQSRFCHAAVENDEGAILQRIFHTTVRHVPRSLY 343
Y + Q S + +E DE IL+ H +RHVPR L+
Sbjct: 137 YSIIIPQSLSMEMLSRIEQDE--ILKTAKHLDIRHVPRELF 175
>AL110478-3|CAB54348.1| 380|Caenorhabditis elegans Hypothetical
protein Y26D4A.8 protein.
Length = 380
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = -2
Query: 684 VFDEIQRHSKIRGAAVDRMGH*RIPRHGLA----TVSHRIYGQN 565
+F E+Q+HS+I A V+++ R H LA T H YG +
Sbjct: 285 LFKELQKHSRILYATVNKIPVVRKTNHALACVRKTTEHLAYGSS 328
>AC090999-6|AAK26143.2| 214|Caenorhabditis elegans Hypothetical
protein Y82E9BR.11 protein.
Length = 214
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/54 (18%), Positives = 32/54 (59%)
Frame = -3
Query: 500 DTMHFLSLIIDDMVYTRDKSSLDFVMQQLKTMKVLFYNVFFILQCAMCRDHYMN 339
+T L + ++++ +SS ++++LK +++FY+++ ++ + HY++
Sbjct: 87 ETKILLEVALNELYEETMESSAKMLLEELKCARLVFYSLYRCIRQGIAVGHYLD 140
>U41746-5|AAT81186.1| 492|Caenorhabditis elegans Innexin protein
10, isoform b protein.
Length = 492
Score = 27.9 bits (59), Expect = 7.8
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Frame = -3
Query: 395 FYNVFFILQCAMCRDHYMNVKGFLIYHIELIEIALDKEKYGTDITFVDSYQQETAGADAA 216
F + F+ L ++ R ++NV+ F+I H+E+ +IA D + G V+ + +D
Sbjct: 299 FGSFFYWLLVSLWR--HLNVR-FIIRHLEMSDIAFDSSEDGAQ-EKVNRFISNYLKSDGV 354
Query: 215 AVSNNMLMKNLMAY----VIMTFHNHVNDYKWIQRNQKPPAHYER-MTWGEYKKLLN 60
V M +++ + + V + N ++R+ P ER W Y L+N
Sbjct: 355 FVIRMMTLQSGVIFGTDLVQELWRNFHGSEPQLKRSNSAPKIEEREQWWPAYPSLVN 411
>U41746-4|AAA83332.1| 559|Caenorhabditis elegans Innexin protein
10, isoform a protein.
Length = 559
Score = 27.9 bits (59), Expect = 7.8
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Frame = -3
Query: 395 FYNVFFILQCAMCRDHYMNVKGFLIYHIELIEIALDKEKYGTDITFVDSYQQETAGADAA 216
F + F+ L ++ R ++NV+ F+I H+E+ +IA D + G V+ + +D
Sbjct: 299 FGSFFYWLLVSLWR--HLNVR-FIIRHLEMSDIAFDSSEDGAQ-EKVNRFISNYLKSDGV 354
Query: 215 AVSNNMLMKNLMAY----VIMTFHNHVNDYKWIQRNQKPPAHYER-MTWGEYKKLLN 60
V M +++ + + V + N ++R+ P ER W Y L+N
Sbjct: 355 FVIRMMTLQSGVIFGTDLVQELWRNFHGSEPQLKRSNSAPKIEEREQWWPAYPSLVN 411
>AF016420-7|AAB65303.1| 428|Caenorhabditis elegans Serpentine
receptor, class r protein8 protein.
Length = 428
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -3
Query: 401 VLFYNVFFILQCAMCRDHYMNVKGFLIYHIELIEIALDKEKYGTDITFVDSYQQ 240
++FYNVF + + ++H LI + E E + D Y T +D +Q+
Sbjct: 330 IIFYNVFVMFPAIILQEHLKTTTRILINNDE-FECSKDPIVYQTYRIMIDRFQK 382
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,231,139
Number of Sequences: 27780
Number of extensions: 406798
Number of successful extensions: 1138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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