Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13h24
(724 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.3
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.3
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 24 1.3
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 23 2.2
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 23 3.9
DQ855482-1|ABH88169.1| 116|Apis mellifera chemosensory protein ... 22 6.7
AJ973399-1|CAJ01446.1| 116|Apis mellifera hypothetical protein ... 22 6.7
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 21 8.9
AY823258-1|AAX18443.1| 145|Apis mellifera pburs protein. 21 8.9
AY736135-1|AAU84701.1| 253|Apis mellifera take-out-like carrier... 21 8.9
AM420632-1|CAM06632.1| 145|Apis mellifera bursicon subunit beta... 21 8.9
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.2 bits (50), Expect = 1.3
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = -3
Query: 584 IEFMDKTTELNLRSCQPKSFTYTFTTIWDTMHFLSLIIDDMVYTR-DKSSLDFVMQQLKT 408
+ MD+ + N+ + + WD + + + ++ YT D+ LD
Sbjct: 183 LRHMDEKSGSNVVDVGVDLSEFYMSVEWDILE-VPAVRNEKFYTCCDEPYLDITFNITMR 241
Query: 407 MKVLFYNVFFILQC 366
K LFY V I+ C
Sbjct: 242 RKTLFYTVNIIIPC 255
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.2 bits (50), Expect = 1.3
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = -3
Query: 584 IEFMDKTTELNLRSCQPKSFTYTFTTIWDTMHFLSLIIDDMVYTR-DKSSLDFVMQQLKT 408
+ MD+ + N+ + + WD + + + ++ YT D+ LD
Sbjct: 183 LRHMDEKSGSNVVDVGVDLSEFYMSVEWDILE-VPAVRNEKFYTCCDEPYLDITFNITMR 241
Query: 407 MKVLFYNVFFILQC 366
K LFY V I+ C
Sbjct: 242 RKTLFYTVNIIIPC 255
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 24.2 bits (50), Expect = 1.3
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -3
Query: 515 FTTI-WDTMHFLSLIIDDMVYTR-DKSSLDFVMQQLKTMKVLFYNVFFILQC 366
+T++ WD + + + ++ YT D+ LD K LFY V I+ C
Sbjct: 201 YTSVEWDILE-VPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPC 251
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 23.4 bits (48), Expect = 2.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -2
Query: 525 YLHVYHHMGHHALSQSHHRRYGVYARQKQ 439
+L +HH Q HHR Y +Q+Q
Sbjct: 143 HLQNHHHHLQSTAVQDHHRPYQQQQQQQQ 171
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 22.6 bits (46), Expect = 3.9
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 535 PRVLLTRLPPYGTP 494
PR+L+ R PY TP
Sbjct: 359 PRLLMMRRTPYSTP 372
>DQ855482-1|ABH88169.1| 116|Apis mellifera chemosensory protein 1
protein.
Length = 116
Score = 21.8 bits (44), Expect = 6.7
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -3
Query: 713 SQATYLYHFACLMKYKDIQKYEVQQLIEWAINASPD 606
S T + C K +IQK + +L EW P+
Sbjct: 65 SHITEAFQTQC-KKCTEIQKQNLDKLAEWFTTNEPE 99
>AJ973399-1|CAJ01446.1| 116|Apis mellifera hypothetical protein
protein.
Length = 116
Score = 21.8 bits (44), Expect = 6.7
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -3
Query: 713 SQATYLYHFACLMKYKDIQKYEVQQLIEWAINASPD 606
S T + C K +IQK + +L EW P+
Sbjct: 65 SHITEAFQTQC-KKCTEIQKQNLDKLAEWFTTNEPE 99
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 21.4 bits (43), Expect = 8.9
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = -2
Query: 525 YLHVYHHMGHHALSQSHHRRYG 460
Y VYH HH +HH G
Sbjct: 270 YGGVYHLDNHHVHHANHHAILG 291
>AY823258-1|AAX18443.1| 145|Apis mellifera pburs protein.
Length = 145
Score = 21.4 bits (43), Expect = 8.9
Identities = 6/22 (27%), Positives = 12/22 (54%)
Frame = -3
Query: 380 FILQCAMCRDHYMNVKGFLIYH 315
F +C CR+ Y+ + ++H
Sbjct: 87 FSKECYCCRESYLKERHITLHH 108
>AY736135-1|AAU84701.1| 253|Apis mellifera take-out-like carrier
protein JHBP-1 protein.
Length = 253
Score = 21.4 bits (43), Expect = 8.9
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -3
Query: 320 YHIELIEIALDKEKYGTDITFVDSYQQE 237
Y+I+ + L E Y + FV Y+ E
Sbjct: 107 YNIDWDKCILSSESYNPQVDFVADYKIE 134
>AM420632-1|CAM06632.1| 145|Apis mellifera bursicon subunit beta
protein precursor protein.
Length = 145
Score = 21.4 bits (43), Expect = 8.9
Identities = 6/22 (27%), Positives = 12/22 (54%)
Frame = -3
Query: 380 FILQCAMCRDHYMNVKGFLIYH 315
F +C CR+ Y+ + ++H
Sbjct: 87 FSKECYCCRESYLKERHITLHH 108
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,317
Number of Sequences: 438
Number of extensions: 4800
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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