Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13h23
(732 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 263 8e-71
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 252 3e-67
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 118 4e-27
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 98 6e-21
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 54 8e-08
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 48 9e-06
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.030
Z50795-1|CAA90662.1| 502|Caenorhabditis elegans Hypothetical pr... 28 7.8
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 7.8
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 263 bits (645), Expect = 8e-71
Identities = 120/217 (55%), Positives = 157/217 (72%)
Frame = -2
Query: 698 PLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDK 519
PLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 31 PLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDS 90
Query: 518 TTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEK 339
+A+ FK+L+KYRPE+ KRPNT+R G NT+T+LVE
Sbjct: 91 QSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVET 150
Query: 338 KKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVES 159
++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V
Sbjct: 151 RRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNP 210
Query: 158 GDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKS 48
D+++ +K+VE + NF+ER+EE+RKHWGGGV+ KS
Sbjct: 211 EDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKS 247
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 252 bits (616), Expect = 3e-67
Identities = 119/217 (54%), Positives = 156/217 (71%)
Frame = -2
Query: 698 PLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDK 519
PLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 31 PLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDS 90
Query: 518 TTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEK 339
+A+ FK+L+KYRPE+ RPNT+R G NT+T+LVE
Sbjct: 91 QSARQAFKLLDKYRPESTEVTK--------------------RPNTVRHGVNTITRLVET 130
Query: 338 KKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVES 159
++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V
Sbjct: 131 RRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNP 190
Query: 158 GDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKS 48
D+++ +K+VE + NF+ER+EE+RKHWGGGV+ KS
Sbjct: 191 EDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKS 227
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 118 bits (284), Expect = 4e-27
Identities = 51/77 (66%), Positives = 64/77 (83%)
Frame = -2
Query: 698 PLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDK 519
PLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 134 PLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDS 193
Query: 518 TTAKGLFKILEKYRPET 468
+A+ FK+L+KYRPE+
Sbjct: 194 HSARQAFKLLDKYRPES 210
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 97.9 bits (233), Expect = 6e-21
Identities = 42/59 (71%), Positives = 50/59 (84%)
Frame = -2
Query: 698 PLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 522
PLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 134 PLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 54.4 bits (125), Expect = 8e-08
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Frame = -2
Query: 380 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 207
++ G N TK + + ++++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACG 94
Query: 206 VHRKTCTCLALTNVESGDRASFSKVVEAIK 117
V R N S ++ K+ E ++
Sbjct: 95 VTRPVIAASITQNEGSQLKSQIQKIKEDVE 124
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 47.6 bits (108), Expect = 9e-06
Identities = 20/89 (22%), Positives = 44/89 (49%)
Frame = -2
Query: 383 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 204
T+R G V K + + + + ++A +V PI++ +P +C + +PY + + +LG V
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127
Query: 203 HRKTCTCLALTNVESGDRASFSKVVEAIK 117
+ + L + + +V EA++
Sbjct: 128 GHRRPSILIFVKPSGDFKELYDEVAEALR 156
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = +3
Query: 426 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 545
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>Z50795-1|CAA90662.1| 502|Caenorhabditis elegans Hypothetical
protein R166.1 protein.
Length = 502
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = +1
Query: 103 SLKFVLMASTTFEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLTMQYGTPILRHNAGRK 282
SL+F+ S+ EK + +P + L + +PL ++ TP+L A +
Sbjct: 121 SLRFLSQLSSVAEKVS-TPSEAADTSSSSPSLNLNTTSSNSVPLAFKFSTPLLESLASDQ 179
Query: 283 RTSSIGS 303
++SS S
Sbjct: 180 QSSSTSS 186
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -3
Query: 553 LRSTNLPRHWTRLQLRA 503
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,850,323
Number of Sequences: 27780
Number of extensions: 321918
Number of successful extensions: 983
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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