Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13h19
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    29   0.051
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.8  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   7.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 0.051
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 233 DDSHSERGAHVRRRPRATTLHGQAQRSLSPPPRGPKPAAR 352
           D +  ++   +  +  A  L G++Q+S + PP GP PA +
Sbjct: 354 DSAKLDKIFDIATKENAMLLSGRSQKSTTGPPPGPTPAQK 393


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 284  TTLHGQAQRSLSPPPRGPKPAARQ 355
            +TL   A R   PPP  P P++ Q
Sbjct: 1343 STLERTAWRQQQPPPPPPPPSSGQ 1366


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -2

Query: 140 RVIKKTLTLVFWILRKSRED*EMRYKAYLLRCR*FTH--LFINLNLYL 3
           R+I     L+FW    S E+      +YLL C+ + H    + L  YL
Sbjct: 4   RIITALGFLLFWQNSASLENDNEFGFSYLLNCKNYDHPTTLLKLKRYL 51


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 251 RGAHVRRRPRATTLHGQAQRSLSPPPRGPKPAARQ 355
           R A +RR  +     G  +    P PR P P  R+
Sbjct: 28  RPARLRREAKPEAEPGNNRPIYIPQPRPPHPRLRR 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,701
Number of Sequences: 438
Number of extensions: 2913
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)