Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13h16
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.9
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S... 27 2.5
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 27 3.3
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.7
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 7.6
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 25 7.6
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 25 10.0
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 25 10.0
SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr... 25 10.0
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 25 10.0
>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +3
Query: 153 LYNEAVGVYSLKRSRLTAWMKF---KRVPIGHVYLCKIM 260
L NEA+ +YS ++ + WM F ++ PI H+ K +
Sbjct: 133 LNNEALKLYSCAKAGICRWMAFHFLEQEPIDHINFTKFL 171
>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 167 GLIIKVLILCDECCKKELRDYIKGENSFNVAFKNCESILCRR 42
G+ + VL L RDY+ N +V+ K+C SIL R+
Sbjct: 145 GINVSVLTLNSNFYVPVYRDYLMALNINSVSKKSCVSILSRK 186
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 49 HKMLSQFLKATLNEFSPLI*SRSSFLQHSSHKINT 153
HKML + L+ + E ++ S+ +L + SH+I T
Sbjct: 973 HKMLEEKLQESNIEAQRIVRSKMQYLSNMSHEIRT 1007
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 5.7
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = -2
Query: 449 ETFQRLRNKNLTTLNKIKYDSELLLHYL 366
+ ++ +NLT N+++ D + +HYL
Sbjct: 146 DVYEFFGGENLTLFNQVRVDCQCYIHYL 173
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.4 bits (53), Expect = 7.6
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -2
Query: 491 PTLLESISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKN 342
P +L S+ K TE R N LT L + E + Y DD NKN
Sbjct: 517 PVVLYSLQSK--DTEVRSRALNLILTFLELRNENLEFSIIYGMDDNDNKN 564
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -2
Query: 476 SISKKISTTETFQRLR-NKNLTTLNKIKYDSELLLHYLYDDQQNKNS 339
S+ ++ T Q+ R NK ++I +D LLLH+L+++ N S
Sbjct: 129 SLPSHVAEDRTAQQYRQNKYQLHFSRITFD--LLLHFLFENVSNGGS 173
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +1
Query: 46 RHKMLSQFLKATLNEFSPLI*SRSSFLQHSSHKINTFIMRPSV 174
++ + +Q K L F P++ ++S L H H + PSV
Sbjct: 938 KYYLENQLSKPLLRIFEPILGEKASSLLHGDHTRTISMAAPSV 980
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 25.0 bits (52), Expect = 10.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 659 EPRAKCYFKQKFIG 618
EP+ KCY KQ F G
Sbjct: 140 EPQIKCYMKQLFAG 153
>SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 251
Score = 25.0 bits (52), Expect = 10.0
Identities = 8/17 (47%), Positives = 15/17 (88%)
Frame = +3
Query: 369 IMKQQFTIVFNFVQRCQ 419
+++Q+ TI+FNF++R Q
Sbjct: 17 LIRQEDTIIFNFLERAQ 33
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -1
Query: 456 DDGDVSAPKKQKLDNAEQN*IR**TVASLFVR*SAE 349
++G +S+ KK++LD +N ++ VASL + + E
Sbjct: 80 NEGSISSKKKKRLDKYIENKLKKEEVASLIAKLAEE 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,111,450
Number of Sequences: 5004
Number of extensions: 33741
Number of successful extensions: 101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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