Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13h16
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c...    30   1.3  
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a...    29   3.0  
AL132948-46|CAD31837.2|  473|Caenorhabditis elegans Hypothetical...    28   5.3  
AF000265-12|ABQ13076.1|  302|Caenorhabditis elegans Hypothetical...    28   7.0  
AF000265-11|AAK68199.1|  298|Caenorhabditis elegans Hypothetical...    28   7.0  
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p...    27   9.2  
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 1 protein.
          Length = 1475

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = -2

Query: 473 ISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKNSD 336
           + K+   +E  +R+R ++ TT   +KY+ EL+   + +D +   ++
Sbjct: 376 VEKEARFSEEMERIRTESQTTSESLKYEHELVRKMMIEDMEKLEAE 421


>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 80 protein.
          Length = 4900

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -2

Query: 503 KKKTPTLLESISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHYLY 363
           K +T  +L+S+  K+ TTE    +   +   +  I+YDS    HY++
Sbjct: 83  KDETKLILKSVEDKLETTEIEGNVPKIDENLIENIQYDSGDQEHYIW 129


>AL132948-46|CAD31837.2|  473|Caenorhabditis elegans Hypothetical
           protein Y39B6A.27 protein.
          Length = 473

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
 Frame = -2

Query: 278 GASILAHYFAQVHVSNGYSFEFHPGSQPRTFQTIHTDGLIIKVLILC--DECCKKELRDY 105
           GA  +  Y   VH S  +     P SQP +    H+  LI  +   C   +CC   +R  
Sbjct: 323 GALAVCIYCCLVHASTPFEAPMRPTSQP-SLLISHSYPLIFIISFFCGMSDCCINSVRSV 381

Query: 104 I 102
           I
Sbjct: 382 I 382


>AF000265-12|ABQ13076.1|  302|Caenorhabditis elegans Hypothetical
           protein C18E3.9b protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -2

Query: 488 TLLESISKKI--STTETFQRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKNSDYA 330
           +++ S+S++   S  +  + +  KNL   NK+K  SE +    +   + K SDYA
Sbjct: 48  SIINSVSEQTLQSWIDFREEINKKNLLLRNKLKIPSEKIDDKYHTFPEKKQSDYA 102


>AF000265-11|AAK68199.1|  298|Caenorhabditis elegans Hypothetical
           protein C18E3.9a protein.
          Length = 298

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -2

Query: 488 TLLESISKKI--STTETFQRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKNSDYA 330
           +++ S+S++   S  +  + +  KNL   NK+K  SE +    +   + K SDYA
Sbjct: 48  SIINSVSEQTLQSWIDFREEINKKNLLLRNKLKIPSEKIDDKYHTFPEKKQSDYA 102


>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -2

Query: 482 LESISKKISTTETFQRLRNKN-LTTLNKIKYDSELLLHYLYDDQQNKNS 339
           LESI +        +R R+KN L  + K+K D+E  L  L DDQ+  ++
Sbjct: 818 LESIFETEREKMNGERNRSKNELAAMKKLKDDAEEHLKKLSDDQKKNDA 866


>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -2

Query: 482 LESISKKISTTETFQRLRNKN-LTTLNKIKYDSELLLHYLYDDQQNKNS 339
           LESI +        +R R+KN L  + K+K D+E  L  L DDQ+  ++
Sbjct: 818 LESIFETEREKMNGERNRSKNELAAMKKLKDDAEEHLKKLSDDQKKNDA 866


>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -2

Query: 482 LESISKKISTTETFQRLRNKN-LTTLNKIKYDSELLLHYLYDDQQNKNS 339
           LESI +        +R R+KN L  + K+K D+E  L  L DDQ+  ++
Sbjct: 818 LESIFETEREKMNGERNRSKNELAAMKKLKDDAEEHLKKLSDDQKKNDA 866


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,794,744
Number of Sequences: 27780
Number of extensions: 190252
Number of successful extensions: 543
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)