Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13h15
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0394 - 3487360-3488229                                           30   2.1  
04_03_0898 + 20660769-20660973,20661077-20661204,20661295-20661687     28   6.3  
02_05_1059 + 33815979-33816235,33816467-33816732,33817149-338171...    28   8.3  

>08_01_0394 - 3487360-3488229
          Length = 289

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/65 (33%), Positives = 27/65 (41%)
 Frame = -2

Query: 463 RKHVLRVACDAGAFVFVARTNVQTRPQNGLCSIQNAAEQRPYA*AQPNVYEHQQ*SAVCA 284
           R H+L VA  AG  VF A T    R Q G+C +  A         QP   +    S   A
Sbjct: 91  RAHILEVA--AGCDVFEALTAYARRRQRGVCVLSAAGTVANVTLRQPQSAQPGPASPAVA 148

Query: 283 HLHSK 269
            LH +
Sbjct: 149 TLHGR 153


>04_03_0898 + 20660769-20660973,20661077-20661204,20661295-20661687
          Length = 241

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
 Frame = +3

Query: 321 LGCAYA*GRCSAAFCILQSPF-WGRVCTLVRATKTNAPASQATRNTCFLSETVWT*CVRT 497
           L CA      +AA  +  +   WGR     RA +  A AS A         T+W  CV  
Sbjct: 134 LSCAAQMAAAAAAMALTTATATWGRRSRRARAVR-RASASVAL---AVAGLTLWLWCVYL 189

Query: 498 RSRQT*RCLQIYGLCKQLKICLV 566
           R     RC + +G+ +++ +  V
Sbjct: 190 RFLPGLRCFRCFGVLRRVAVAAV 212


>02_05_1059 + 33815979-33816235,33816467-33816732,33817149-33817192,
            33817363-33817539,33817638-33817964,33818067-33818192,
            33818518-33818622,33818815-33820125,33820221-33820382,
            33820416-33820517,33820549-33821272,33821358-33821451,
            33821824-33821986
          Length = 1285

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/75 (22%), Positives = 38/75 (50%)
 Frame = -3

Query: 324  LMCMSTNNSPLYALIYILNIKTVRNATITIGEDKMEEMISIAVQHLKNFLHPSFVQYNYK 145
            ++CM T+      L+++L   +++N T+ +G+D  ++  ++A    +   HP   Q   +
Sbjct: 946  VLCMKTD------LLFVLVHTSMQNNTLEVGKDVAKDTDNVANAEEQVLNHPLAEQVKSE 999

Query: 144  KNINASSSKSFVFNE 100
            K I    S + + +E
Sbjct: 1000 KQIYPGISTTLICSE 1014


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,897,703
Number of Sequences: 37544
Number of extensions: 298531
Number of successful extensions: 618
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)