Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13h12
(297 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 25 2.4
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 2.4
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 25 3.1
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 24 4.2
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 24 4.2
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 24 4.2
SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr... 24 5.5
SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomy... 24 5.5
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 24 5.5
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 24 5.5
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 23 7.3
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 23 9.6
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 23 9.6
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.0 bits (52), Expect = 2.4
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -2
Query: 125 SKPSLKWAAYSW 90
SKPSLKW A W
Sbjct: 381 SKPSLKWLATKW 392
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.0 bits (52), Expect = 2.4
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = -1
Query: 288 NQGMCGACWAFATLGSLESQFAIKHNELINLSEQQMI----DCD 169
N G+ G TL L +F K N L+NL + M+ DCD
Sbjct: 2032 NSGLLGWVPHSDTLHFLIKEFRSKRNILLNLEHRMMLQMAPDCD 2075
>SPBC19C7.08c |||leucine carboxyl
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 681
Score = 24.6 bits (51), Expect = 3.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 12 NLLLELETC*SSYGNCYC 65
NLL +LE+C YG YC
Sbjct: 167 NLLNQLESCLEKYGIDYC 184
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 24.2 bits (50), Expect = 4.2
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -1
Query: 237 ESQFAIKHNELINLSEQQMIDCDFVDAGCNGGL 139
+S++ ++H L+N +IDC + +G + GL
Sbjct: 395 DSKYYVRH--LVNQQVYPLIDCGYGPSGTSDGL 425
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 24.2 bits (50), Expect = 4.2
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -1
Query: 144 GLLHTAFEAIIKMGGVQLESD-YPYEADNNNCRMNSNKFLVQVKD 13
G++HT FE +G + D + Y+ + N CR + K+L + K+
Sbjct: 334 GVIHTDFEKAFVVGEIMHYQDLFDYKTE-NACRA-AGKYLTKGKE 376
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 24.2 bits (50), Expect = 4.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 228 IDFPNCPEWQTPSRRHTF 281
I++PN P +P HTF
Sbjct: 8 IEYPNTPPLHSPPESHTF 25
>SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 171
Score = 23.8 bits (49), Expect = 5.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 269 PAGRLPLWAVWKVNLQSNI 213
PA LP WA+W ++L +I
Sbjct: 132 PAFLLPSWALWVLSLPRSI 150
>SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 327
Score = 23.8 bits (49), Expect = 5.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 116 MASNAVCNKPPLQ 154
+ASN CN PPLQ
Sbjct: 248 IASNLACNIPPLQ 260
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 23.8 bits (49), Expect = 5.5
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +1
Query: 49 TAIVIVCFVWIVAFQLYAAHF 111
+ ++IVC +WI+ +Y F
Sbjct: 590 SGLIIVCLIWILVAAIYIILF 610
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 23.8 bits (49), Expect = 5.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 222 IKHNELINLSEQQMIDCDFVDAGCNGGLLH 133
+KH ELI+ + D D VD+ +G H
Sbjct: 675 LKHLELISSAANSFSDSDLVDSMIHGPQQH 704
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 23.4 bits (48), Expect = 7.3
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = -2
Query: 164 STPAVTAACCIQHSKPSLKWAAYSWKATIHTK 69
++PA+ I+ +K L WA + K H +
Sbjct: 815 TSPAILTFNAIEKTKVELTWAHFELKVASHVE 846
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 23.0 bits (47), Expect = 9.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 237 PNCPEWQTPSRRHTFLD 287
PNC + TPS +TF++
Sbjct: 213 PNCKDNNTPSISNTFIE 229
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 123 EAIIKMGGVQLESDYPYEADNN 58
EAI K G +LES P ++N
Sbjct: 114 EAITKESGAELESSEPASTNSN 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,174,093
Number of Sequences: 5004
Number of extensions: 19457
Number of successful extensions: 58
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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