Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13h12
         (297 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   2.4  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    20   7.4  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    20   7.4  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    20   7.4  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    20   7.4  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    20   7.4  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    19   9.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    19   9.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    19   9.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    19   9.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 2.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 281 ECVAPAGRLPLWAVW 237
           +C+ P G LPL   W
Sbjct: 604 QCIVPTGDLPLNIRW 618


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 19.8 bits (39), Expect = 7.4
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -1

Query: 87  SDYPYEADNNNCRMNSNKFLVQV 19
           ++Y Y  +NNN   N  K    +
Sbjct: 94  NNYKYNYNNNNYNNNCKKLYYNI 116


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 19.8 bits (39), Expect = 7.4
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -1

Query: 87  SDYPYEADNNNCRMNSNKFLVQV 19
           ++Y Y  +NNN   N  K    +
Sbjct: 94  NNYKYNYNNNNYNNNCKKLYYNI 116


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 19.8 bits (39), Expect = 7.4
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -1

Query: 87  SDYPYEADNNNCRMNSNKFLVQV 19
           ++Y Y  +NNN   N  K    +
Sbjct: 94  NNYKYNYNNNNYNNNCKKLYYNI 116


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 19.8 bits (39), Expect = 7.4
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -1

Query: 87  SDYPYEADNNNCRMNSNKFLVQV 19
           ++Y Y  +NNN   N  K    +
Sbjct: 94  NNYKYNYNNNNYNNNCKKLYYNI 116


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 19.8 bits (39), Expect = 7.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 124 RSHH*NGRRTAGKRLSIRSRQ 62
           R H    R T GKR  IR ++
Sbjct: 5   RDHWHKRRATGGKRKPIRKKR 25


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 274 WRLLGVCHSGQFGK 233
           WRL+  C SG+  K
Sbjct: 832 WRLMEQCWSGEPSK 845


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 274 WRLLGVCHSGQFGK 233
           WRL+  C SG+  K
Sbjct: 870 WRLMEQCWSGEPSK 883


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = +2

Query: 122 SNAVCNKPPLQPASTKSQSIICCSDR 199
           + AV   PP  P S        C DR
Sbjct: 91  NKAVAPYPPNHPLSGSKHLCSICGDR 116


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = +2

Query: 122 SNAVCNKPPLQPASTKSQSIICCSDR 199
           + AV   PP  P S        C DR
Sbjct: 91  NKAVAPYPPNHPLSGSKHLCSICGDR 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,501
Number of Sequences: 438
Number of extensions: 1368
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6119169
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)