Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13h09
(447 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 159 7e-40
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 159 1e-39
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 158 2e-39
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 47 6e-06
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 29 2.3
06_02_0345 + 14833838-14833997,14834095-14834552,14834633-148348... 29 2.3
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794... 29 2.3
01_05_0426 + 22042215-22042595,22044846-22045688 27 5.2
03_03_0162 - 14964106-14964644,14964810-14965020 27 6.9
02_01_0686 + 5112712-5112942 27 6.9
05_05_0026 + 21645845-21647404 27 9.1
03_06_0677 + 35476009-35476014,35476974-35477474,35477574-354777... 27 9.1
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124... 27 9.1
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 159 bits (387), Expect = 7e-40
Identities = 73/114 (64%), Positives = 92/114 (80%)
Frame = -2
Query: 344 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 165
A + G + +A ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKGPVR+P
Sbjct: 9 AGGAMKGGKLGMEEARELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIP 68
Query: 164 TKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVE 3
TK+L ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S ++VKQITSI IEPGVE
Sbjct: 69 TKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVE 122
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 159 bits (385), Expect = 1e-39
Identities = 77/119 (64%), Positives = 95/119 (79%), Gaps = 4/119 (3%)
Frame = -2
Query: 347 MAAAVV----SGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKG 180
MAAA V G + +A ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKG
Sbjct: 1 MAAAAVYGGMKGGKLGVEEAHELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKG 60
Query: 179 PVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVE 3
PVR+PTK+L ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S ++VKQITSI IEPGVE
Sbjct: 61 PVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVE 119
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 158 bits (383), Expect = 2e-39
Identities = 75/114 (65%), Positives = 93/114 (81%)
Frame = -2
Query: 344 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 165
A + SGK + EV HRIRITL+S++V++LEKVC DL+ GAK + L+VKGPVRMP
Sbjct: 9 APPMKSGKIGFESSQEVQ--HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMP 66
Query: 164 TKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVE 3
TK+L ITTRK+PCGEG+ TWDRF+MR+HKRVIDL S +++VKQITSI IEPGVE
Sbjct: 67 TKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVE 120
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 47.2 bits (107), Expect = 6e-06
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = -2
Query: 296 VSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEG 117
++P +IRI L S V +E C +I AK + GPV +PTK +P
Sbjct: 329 LAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTKRRVYCVLNSPHVHK 388
Query: 116 SKTWDRFQMRIHKRVIDLHSP-SEIVKQITSINIEPGVE 3
+ F++R H+R+ID+ P ++ + + + + GV+
Sbjct: 389 DSRF-HFEIRTHQRLIDIMYPTAQTIDSLMQLQLPAGVD 426
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 345 GSRCSVRQRHRETPGRGLPYSP 280
G CS R+RHR G LP++P
Sbjct: 73 GVTCSRRRRHRRVTGLSLPHTP 94
>06_02_0345 +
14833838-14833997,14834095-14834552,14834633-14834870,
14834974-14835431,14836554-14836955
Length = 571
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = -1
Query: 279 HQDHSYFSQCALTREGLC*PNQWSQETEAACKG--PSPH---ANQDPA 151
H S +CAL R+G +W ET C G P+P +QDPA
Sbjct: 11 HHLQSTLFECALLRDGRAESFEWLFETFKNCMGNCPTPRCILTDQDPA 58
>03_06_0314 -
33077621-33077869,33078218-33078280,33079392-33079449,
33079534-33079688,33079797-33080106,33080634-33080890,
33081280-33081359,33083888-33083948
Length = 410
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 252 CALTREGLC*PNQWSQETEAACKGPSP 172
C L EGL ++W++ A +GPSP
Sbjct: 155 CRLAAEGLVTASKWARPGRAGTRGPSP 181
>01_05_0426 + 22042215-22042595,22044846-22045688
Length = 407
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = -1
Query: 273 DHSYFSQCALTREGLC*PNQWSQETEAACKGPSPHANQDPAYH 145
DH A TR G+ E P PH PAYH
Sbjct: 13 DHGVRQVWADTRHGIAGGEHERVHAETFALAPQPHKQHRPAYH 55
>03_03_0162 - 14964106-14964644,14964810-14965020
Length = 249
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 323 CLTLQRLPCCLLNSGRDKQLFNQKLFSAEPEKPHVSVTFER 445
C L+R+ C +K F+Q L E+PH +++F R
Sbjct: 31 CNRLKRIFACGCAGRTEKLRFSQTLSRFRLEQPHATISFVR 71
>02_01_0686 + 5112712-5112942
Length = 76
Score = 27.1 bits (57), Expect = 6.9
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -3
Query: 376 FISAGIQQA-TWQPL*CQAKTSRNPRQRSPLFTASGSLLLLAMCAHSRR 233
FI A + + W+ + K +RN R+R LF L LA A RR
Sbjct: 6 FIGAALIEVWRWEERMVEKKRTRNTRERGGLFPRKLQLRALAAIARFRR 54
>05_05_0026 + 21645845-21647404
Length = 519
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 199 CFLAPLIRSAQTFSSERTL 255
C L PL+RSA ++ SER L
Sbjct: 171 CRLIPLLRSASSYGSERLL 189
>03_06_0677 +
35476009-35476014,35476974-35477474,35477574-35477762,
35477925-35477945
Length = 238
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 222 PNQWSQETEAACKGPSPHANQDPAYHHP 139
PN +TEA K HA DPA P
Sbjct: 41 PNNHHGDTEALSKASPLHAGSDPAMRKP 68
>01_06_1409 -
37111954-37112061,37112295-37112330,37112434-37112498,
37112610-37112688,37112967-37113041,37113623-37114147
Length = 295
Score = 26.6 bits (56), Expect = 9.1
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = -2
Query: 398 TIFD*KVVYLGRNSTSNMAAAVVSGKDIEK-PQAEVSPIHRIRITLTSRNVRSLEKVCAD 222
+I + K V L + N+ SG +I+ + V+ IHR R+TL +++ S
Sbjct: 215 SILEAKDVLLHAERSWNITLPGFSGDEIKLYKKPHVNDIHRERLTLIKKSMASESNAKGS 274
Query: 221 LINGAKKQKLRVKGP 177
A QK + P
Sbjct: 275 AAQAAANQKNQTPKP 289
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,579,700
Number of Sequences: 37544
Number of extensions: 269730
Number of successful extensions: 684
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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