Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13h09
         (447 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y11119-1|CAA72004.1|  120|Drosophila melanogaster S20 ribosomal ...   196   1e-50
AY071742-1|AAL49364.1|  120|Drosophila melanogaster RH47995p pro...   196   1e-50
AE014297-2870|AAF55809.1|  120|Drosophila melanogaster CG15693-P...   196   1e-50
AY071353-1|AAL48975.1|  120|Drosophila melanogaster RE38972p pro...   191   4e-49
AY075183-1|AAL68053.1|  388|Drosophila melanogaster AT13019p pro...    27   8.7  
AE013599-3908|AAF47233.2|  388|Drosophila melanogaster CG4681-PA...    27   8.7  

>Y11119-1|CAA72004.1|  120|Drosophila melanogaster S20 ribosomal
           protein protein.
          Length = 120

 Score =  196 bits (477), Expect = 1e-50
 Identities = 93/108 (86%), Positives = 98/108 (90%), Gaps = 1/108 (0%)
 Frame = -2

Query: 323 KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 147
           KDIEKP   + + +HRIRITLTSRNVRSLE VC DLINGAK Q LRVKGPVRMPTK LRI
Sbjct: 6   KDIEKPHVGDSASVHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGPVRMPTKTLRI 65

Query: 146 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVE 3
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVK+ITSINIEPGVE
Sbjct: 66  TTRKTPCGEGSKTWDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGVE 113


>AY071742-1|AAL49364.1|  120|Drosophila melanogaster RH47995p
           protein.
          Length = 120

 Score =  196 bits (477), Expect = 1e-50
 Identities = 93/108 (86%), Positives = 98/108 (90%), Gaps = 1/108 (0%)
 Frame = -2

Query: 323 KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 147
           KDIEKP   + + +HRIRITLTSRNVRSLE VC DLINGAK Q LRVKGPVRMPTK LRI
Sbjct: 6   KDIEKPHVGDSASVHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGPVRMPTKTLRI 65

Query: 146 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVE 3
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVK+ITSINIEPGVE
Sbjct: 66  TTRKTPCGEGSKTWDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGVE 113


>AE014297-2870|AAF55809.1|  120|Drosophila melanogaster CG15693-PA
           protein.
          Length = 120

 Score =  196 bits (477), Expect = 1e-50
 Identities = 93/108 (86%), Positives = 98/108 (90%), Gaps = 1/108 (0%)
 Frame = -2

Query: 323 KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 147
           KDIEKP   + + +HRIRITLTSRNVRSLE VC DLINGAK Q LRVKGPVRMPTK LRI
Sbjct: 6   KDIEKPHVGDSASVHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGPVRMPTKTLRI 65

Query: 146 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVE 3
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVK+ITSINIEPGVE
Sbjct: 66  TTRKTPCGEGSKTWDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGVE 113


>AY071353-1|AAL48975.1|  120|Drosophila melanogaster RE38972p
           protein.
          Length = 120

 Score =  191 bits (465), Expect = 4e-49
 Identities = 91/108 (84%), Positives = 97/108 (89%), Gaps = 1/108 (0%)
 Frame = -2

Query: 323 KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 147
           KDIEKP   + + +H IRITLTSRNVRSLE VC DLINGAK Q LRV+GPVRMPTK LRI
Sbjct: 6   KDIEKPHVGDSASVHCIRITLTSRNVRSLENVCRDLINGAKNQNLRVEGPVRMPTKTLRI 65

Query: 146 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVE 3
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVK+ITSINIEPGVE
Sbjct: 66  TTRKTPCGEGSKTWDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGVE 113


>AY075183-1|AAL68053.1|  388|Drosophila melanogaster AT13019p
           protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 323 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQ 198
           K + + Q +    HR  + L    +R+L++   DL+N  KKQ
Sbjct: 310 KLLREEQRDQLEAHRKELKLRDSRIRALKRQRGDLLNAYKKQ 351


>AE013599-3908|AAF47233.2|  388|Drosophila melanogaster CG4681-PA
           protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 323 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQ 198
           K + + Q +    HR  + L    +R+L++   DL+N  KKQ
Sbjct: 310 KLLREEQRDQLEAHRKELKLRDSRIRALKRQRGDLLNAYKKQ 351


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,035,973
Number of Sequences: 53049
Number of extensions: 463488
Number of successful extensions: 1193
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1435027293
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)