Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13h08
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 143 2e-35
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 29 0.48
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 27 3.4
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 27 3.4
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar... 27 3.4
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 27 3.4
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 25 7.9
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 25 7.9
SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.9
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 143 bits (346), Expect = 2e-35
Identities = 73/139 (52%), Positives = 97/139 (69%), Gaps = 4/139 (2%)
Frame = -3
Query: 462 LDFRIGKIVEISKHPDADSLYVEKIDCGE-ENPRTVVSGLVNHVPIDEMRERIVMVLCNL 286
+DFRIG I + KHP+ADSLYV I CG+ E PRTV SGLV ++P+++M++R V+V+ NL
Sbjct: 282 IDFRIGFIEKAVKHPNADSLYVSTIHCGDAEGPRTVCSGLVKYIPLEQMQQRKVIVVANL 341
Query: 285 KPVKMRGVTSEAMVMCASSAEK--VEVLIPPPDAIPGDLVVCEGY-PREPEAVLNPKKKI 115
KPV MR V S+AMV CASS +K VE ++PP +A GD + EG+ EPEA LNPK+KI
Sbjct: 342 KPVNMRSVKSQAMVFCASSPDKSVVEFVLPPENAEIGDRLTFEGFDTEEPEAQLNPKRKI 401
Query: 114 FETCAPDLKTNNEKIACYK 58
+E P + + I YK
Sbjct: 402 WEAIQPGFTSGEDLICGYK 420
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.5 bits (63), Expect = 0.48
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -3
Query: 429 SKHPDADSLYVEKIDCGEENPRTVVSGLVNHVPIDEMRERI 307
SK P ++ IDC EE + ++ +V VP+DE+ E +
Sbjct: 807 SKTPQVVGALLD-IDCDEELVQNLLMSVVGQVPVDELVEEV 846
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 432 ISKHPDADSLYVEKID 385
I K PD +SLY+EK D
Sbjct: 193 IQKEPDLESLYIEKTD 208
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 411 DSLYVEKIDCGEENPRTVVSGLVNHVPI-DEMRERIVMVLCNL 286
DS ++EK+ C S L NH+ + D R+ + LC+L
Sbjct: 1001 DSWFLEKLPCPLTQSLQSFSHLSNHIEVLDSTRQSRLTFLCHL 1043
>SPAC19D5.06c |din1||Dhp1p-interacting protein
Din1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 358 CVWFSKPCSNR*NARKNSYGTLQLETS*DERCNI 257
C+W KPCS + + + GT++ + S E N+
Sbjct: 202 CIWDKKPCSAKESDVHSDDGTIEEDASNAENPNL 235
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 249 MVMCASSAEKVEVLIPPPD 193
++ C A K +LIPPPD
Sbjct: 753 LIQCKKPARKTPLLIPPPD 771
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 122 FLGLSTASGS--LGYPSHTTKSPGIASGGGIKT 214
F G+ +SG LG PS + KS G A GG+++
Sbjct: 13 FFGVIASSGCNILGQPSSSAKSVGRAIVGGLES 45
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = -3
Query: 483 IAVDVRKL-DFRIGKIVEISKHPDADSLYVEKIDC-GEENPRTVVSGLVNHVPI 328
+A+DV + D + G V + +P+ L +E++ ENP +++GL VP+
Sbjct: 316 LAIDVTDVPDVKRGDDVVLWGNPE---LTIEEVSTFSNENPFEIITGLTRRVPL 366
>SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 166
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -1
Query: 566 KNQLSIKRRRKSKILT--KNPKINLVNR 489
KN+ KRR+ SK+LT N +I VNR
Sbjct: 77 KNEHFSKRRKLSKVLTPPTNDEIKFVNR 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,848,898
Number of Sequences: 5004
Number of extensions: 58028
Number of successful extensions: 157
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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