Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13h08
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0207 - 17927753-17927983,17928077-17928178,17928273-179285... 168 4e-42
04_03_0267 + 13660546-13660953,13661937-13662143,13662379-13662522 130 8e-31
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637... 121 6e-28
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 34 0.12
09_04_0480 + 17958726-17958926,17959294-17959382,17960176-179602... 29 2.6
02_01_0340 + 2415272-2415486,2415883-2416308,2416313-2417243 29 3.5
09_04_0147 - 15099406-15099446,15100171-15100341,15101032-151011... 29 4.6
01_01_1063 - 8386813-8387236,8387322-8387779 28 6.1
>06_03_0207 - 17927753-17927983,17928077-17928178,17928273-17928502,
17929257-17929343,17931263-17931389,17931485-17931628,
17931920-17931985,17932136-17932254,17932437-17932551,
17932626-17932732,17932969-17932983,17933810-17933900,
17934528-17934671,17934750-17934980,17935093-17935248,
17935330-17935483,17935973-17936117,17936241-17936355
Length = 792
Score = 168 bits (408), Expect = 4e-42
Identities = 84/149 (56%), Positives = 104/149 (69%), Gaps = 2/149 (1%)
Frame = -3
Query: 489 ADIAVDVRKLDFRIGKIVEISKHPDADSLYVEKIDCGEENPRTVVSGLVNHVPIDEMRER 310
A++ V V KLD R+G I + KHPDADSLYVE+ID GEE PRTVVSGLV +P++EM+ R
Sbjct: 625 AEVDVTVAKLDIRVGLIRKAQKHPDADSLYVEEIDVGEEAPRTVVSGLVKFIPLEEMQNR 684
Query: 309 IVMVLCNLKPVKMRGVTSEAMVMCASSAE--KVEVLIPPPDAIPGDLVVCEGYPREPEAV 136
V VLCNLKPV MRG+ S AMV+ AS+ + KVE++ PP A G+ V GY EPEA
Sbjct: 685 KVCVLCNLKPVAMRGIKSHAMVLAASNEDHTKVELVEPPESAAVGERVTFAGYSGEPEAS 744
Query: 135 LNPKKKIFETCAPDLKTNNEKIACYKGNP 49
LN K K +E + DL +N E +ACYK P
Sbjct: 745 LNAKSKTWEKLSADLHSNGELVACYKDVP 773
>04_03_0267 + 13660546-13660953,13661937-13662143,13662379-13662522
Length = 252
Score = 130 bits (315), Expect = 8e-31
Identities = 70/160 (43%), Positives = 102/160 (63%), Gaps = 8/160 (5%)
Frame = -3
Query: 462 LDFRIGKIVEISKHPDADSLYVEKIDCGEENPRTVVSGLVNHVPIDEMRERIVMVLCNLK 283
LD R+G++V+ +HP+AD+LYVE++D GEE PRT+ SGLVN++PID++++ V+VL NLK
Sbjct: 88 LDIRVGRVVKAWRHPEADTLYVEEVDVGEEQPRTICSGLVNYLPIDQLQDSNVIVLANLK 147
Query: 282 PVKMRGVTSEAMVMCASSA--EKVEVLIPPPDAIPGDLV---VCEGYPREPEAVLN---P 127
P MRG+ S M+M AS A E VE+L PP ++PG+ V +G R+ EA
Sbjct: 148 PRNMRGIKSNGMLMAASDASHENVELLTPPEGSVPGERVWFGTEDGKDRQSEAASPNQVQ 207
Query: 126 KKKIFETCAPDLKTNNEKIACYKGNPIIVPGKGPIIAPTL 7
KKKI+E+ P L+T +E + G + G + TL
Sbjct: 208 KKKIWESVQPHLRT-SENCTAFLGEHPMRTSAGVVFCKTL 246
>01_06_1167 -
35062766-35062870,35063165-35063228,35063647-35063738,
35064137-35064205,35064322-35064412,35064509-35064732,
35065064-35065180,35065583-35065651,35066172-35066237,
35066335-35066505,35066581-35066661,35067620-35067700
Length = 409
Score = 121 bits (291), Expect = 6e-28
Identities = 65/148 (43%), Positives = 90/148 (60%), Gaps = 2/148 (1%)
Frame = -3
Query: 486 DIAVDVRKLDFRIGKIVEISKHPDADSLYVEKIDCGEENPRTVVSGLVNHVPIDEMRERI 307
D +V L+ ++G I + KHP ADSL VE+ID G+ N VVSGL +E+ R
Sbjct: 244 DSECNVSILNIQVGLIRKAWKHPSADSLLVEEIDLGDGNVHQVVSGLAKFFSPEELVNRH 303
Query: 306 VMVLCNLKPVKMRGVTSEAMVMCASSAEK--VEVLIPPPDAIPGDLVVCEGYPREPEAVL 133
V+++ N+KP K+R V S +V+CAS+ + VE LIPP A PG+ + G+ +PE VL
Sbjct: 304 VVLITNVKPGKLRDVMSAGLVLCASNQDHTVVEPLIPPEGAKPGERISFAGFDGKPEDVL 363
Query: 132 NPKKKIFETCAPDLKTNNEKIACYKGNP 49
NPKKK + PDL T+ IA Y+G P
Sbjct: 364 NPKKKQLDKITPDLHTDGNGIATYRGVP 391
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = -3
Query: 201 PPDAIPGDLVVCEGYPREPEAVLNPKKKIFETCAPDLKTNNEKIACYKGNPIIVPGKGPI 22
PP+ +PG + YP PE V +P + P++ + +I Y P IVP P
Sbjct: 484 PPEVVPGPPEI-NPYPSPPEIVPSPPEITPYPSPPEIVPSPPEITPYPSPPEIVPSP-PE 541
Query: 21 IAPT 10
IAP+
Sbjct: 542 IAPS 545
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -3
Query: 201 PPDAIPGDLVVCEGYPREPEAVLNPKKKIFETCAPDLKTNNEKIACYKGNPIIVPGKGPI 22
PP+ P + YP PE V +P + P++ + +I Y P +VPG P
Sbjct: 436 PPEVTPSPPEIAP-YPSPPEIVPSPPEITPYPSPPEIVPSPPEITPYPSPPEVVPGP-PE 493
Query: 21 IAP 13
I P
Sbjct: 494 INP 496
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/64 (32%), Positives = 27/64 (42%)
Frame = -3
Query: 204 PPPDAIPGDLVVCEGYPREPEAVLNPKKKIFETCAPDLKTNNEKIACYKGNPIIVPGKGP 25
PPP P VV YP PE +P + P++ + +I Y P IVP P
Sbjct: 421 PPPSVTPLPPVV---YPSPPEVTPSPPEIAPYPSPPEIVPSPPEITPYPSPPEIVPSP-P 476
Query: 24 IIAP 13
I P
Sbjct: 477 EITP 480
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = -3
Query: 201 PPDAIPGDLVVCEGYPREPEAVLNPKKKIFETCAPDLKTNNEKIACYKGNPIIVPGKGPI 22
PP+ +P + YP PE V P + P++ + +I Y P IVP P
Sbjct: 468 PPEIVPSPPEITP-YPSPPEVVPGPPEINPYPSPPEIVPSPPEITPYPSPPEIVPSP-PE 525
Query: 21 IAP 13
I P
Sbjct: 526 ITP 528
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -3
Query: 201 PPDAIPGDLVVCEGYPREPEAVLNPKKKIFETCAPDLKTNNEKIACYKGNPIIVP 37
PP+ P + YP PE V +P K P++ + +I Y P IVP
Sbjct: 592 PPEITPSPPEITP-YPSPPEVVPSPPKITPYPSPPEVTPSPPEITPYPSPPDIVP 645
>09_04_0480 +
17958726-17958926,17959294-17959382,17960176-17960242,
17960329-17960444,17960978-17961044,17961158-17961206,
17961630-17961715,17961825-17962078,17962158-17962213,
17962683-17962768,17963047-17963139,17963790-17964219,
17964338-17964861,17964962-17965190,17965271-17965566
Length = 880
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 312 RIVMVLCNLKPVKMRGVTSEAMVMCASSAEKVEVLIPPPDAI 187
RIV C++ PV+ V +E + C S E ++V P+ +
Sbjct: 338 RIVYSTCSMNPVENEAVVAEILRRCGDSVELLDVSNELPELV 379
>02_01_0340 + 2415272-2415486,2415883-2416308,2416313-2417243
Length = 523
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 146 GSLGYPSHTTKSPGIASGGGIKTSTFSADDAH 241
G+ G + T PG A+GGG +T AD +H
Sbjct: 21 GASGSGTSKTPHPGCAAGGGCGCATVEADRSH 52
>09_04_0147 -
15099406-15099446,15100171-15100341,15101032-15101139,
15101974-15102034,15102126-15102266
Length = 173
Score = 28.7 bits (61), Expect = 4.6
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = -3
Query: 303 MVLCNLKPVKMRGVTSEAMVMCASSAEKVEVLIPPPDAIPGDLVVCEGYPR---EPEAVL 133
MV NLK + + A V A + +P I G LV EG+PR + AVL
Sbjct: 1 MVATNLKAETVGLMDRRAAVEAEMDAIIAALSVPVGPGITGGLVDAEGFPRSDIDIPAVL 60
Query: 132 NPKKKIFE 109
++K+ E
Sbjct: 61 AQRRKLAE 68
>01_01_1063 - 8386813-8387236,8387322-8387779
Length = 293
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -3
Query: 249 MVMCASSAEKVEVL--IPPPDAIPGDLVVCEGYPREPEAVLNPKKKIFETC 103
M+ A AE +L + PD+ L V EG+PR P +P + ++TC
Sbjct: 99 MLAVAMFAEHAYMLLAVAAPDSSAAGLAVAEGHPRVPS---DPARLTWQTC 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,541,193
Number of Sequences: 37544
Number of extensions: 341727
Number of successful extensions: 878
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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