Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13h08
(692 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73427-5|CAA97803.1| 917|Caenorhabditis elegans Hypothetical pr... 202 2e-52
AL031633-6|CAA21014.3| 225|Caenorhabditis elegans Hypothetical ... 31 0.78
Z66511-7|CAD57693.1| 567|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z46241-4|CAA86318.1| 837|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z81542-3|CAB04415.1| 308|Caenorhabditis elegans Hypothetical pr... 28 5.5
AF003383-3|ABO16467.1| 438|Caenorhabditis elegans Cyclophylin p... 28 5.5
U55370-2|AAA97994.1| 561|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z79694-3|CAB01962.3| 594|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z79598-7|CAB01866.1| 386|Caenorhabditis elegans Hypothetical pr... 27 9.6
L15313-10|AAP68920.1| 355|Caenorhabditis elegans Hypothetical p... 27 9.6
L15313-9|AAP68921.1| 357|Caenorhabditis elegans Hypothetical pr... 27 9.6
AY387697-1|AAR26326.1| 594|Caenorhabditis elegans SOL-1 protein. 27 9.6
AF145375-1|AAD39814.1| 386|Caenorhabditis elegans TAB1-like pro... 27 9.6
>Z73427-5|CAA97803.1| 917|Caenorhabditis elegans Hypothetical protein
F58B3.5 protein.
Length = 917
Score = 202 bits (492), Expect = 2e-52
Identities = 93/160 (58%), Positives = 119/160 (74%)
Frame = -3
Query: 486 DIAVDVRKLDFRIGKIVEISKHPDADSLYVEKIDCGEENPRTVVSGLVNHVPIDEMRERI 307
D +DV +LD R+G+I++ KHPDAD+LYVE+ID GE PRTVVSGLV HVP+D+M+ R+
Sbjct: 752 DDTIDVGRLDMRVGRIIKCEKHPDADALYVEQIDVGESAPRTVVSGLVRHVPLDQMQNRL 811
Query: 306 VMVLCNLKPVKMRGVTSEAMVMCASSAEKVEVLIPPPDAIPGDLVVCEGYPREPEAVLNP 127
V+VLCNLKP KMRGV S AMVMCASS +KVE++ P D+ PG VVC Y P+ LNP
Sbjct: 812 VVVLCNLKPAKMRGVESRAMVMCASSPDKVEIMEVPADSKPGTPVVCPPYTHRPDEQLNP 871
Query: 126 KKKIFETCAPDLKTNNEKIACYKGNPIIVPGKGPIIAPTL 7
KKKI+ET A DLK + E A +KG P+++ + + APTL
Sbjct: 872 KKKIWETVAEDLKVSAEGFAEWKGQPLLIGSESKMTAPTL 911
>AL031633-6|CAA21014.3| 225|Caenorhabditis elegans Hypothetical
protein Y39A1A.8 protein.
Length = 225
Score = 31.1 bits (67), Expect = 0.78
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 544 LFIDNWFFITNGILNSCNNLGCFQQVCFTRY 636
LFI + ++ CN +GCF Q C+ Y
Sbjct: 58 LFIQYGLLKDDDVITYCNGIGCFLQACYLMY 88
>Z66511-7|CAD57693.1| 567|Caenorhabditis elegans Hypothetical
protein F07A11.6d protein.
Length = 567
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -3
Query: 204 PPPDAIPGDLVVCEGYPREPEAVLNPKKKIFETCAPDLKTNNE 76
PPP P V P P + P+K +FE P++K NE
Sbjct: 204 PPPPQQPMQAVA----PAPPRSPSPPRKSMFENLPPEMKEKNE 242
>Z46241-4|CAA86318.1| 837|Caenorhabditis elegans Hypothetical
protein C38D4.5 protein.
Length = 837
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = -3
Query: 324 EMRERIVMVLCNLKPVKMRGVTSEAMVMCASSAEKVEVLIPPPDAIPGDLV-VCEGYPRE 148
+ R+ I + LCN K +RG V S E+V +P P + ++ V G R
Sbjct: 468 KQRKYIQLELCNTKKYLLRGPNDTEAVEWYKSLEEVVAKLPSPGSSNQPMIDVTNGVARN 527
Query: 147 PEAV 136
P +
Sbjct: 528 PSYI 531
>Z81542-3|CAB04415.1| 308|Caenorhabditis elegans Hypothetical
protein F49A5.4 protein.
Length = 308
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 46 YWITLITGYLFIICF*IGCTSLKYFL 123
+W+ ++ G +F I F IG L YFL
Sbjct: 12 HWMVILLGIIFEILFTIGVVRLTYFL 37
>AF003383-3|ABO16467.1| 438|Caenorhabditis elegans Cyclophylin
protein 17 protein.
Length = 438
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = -3
Query: 165 EGYPREPEAVLNPKKKIFETCAPDLKTNNEKIA-----CYKGNPIIVPGKGP 25
E P EPE P++ + T + KTN E+ +K PI VP GP
Sbjct: 350 ETTPEEPEITTVPEEDVVVTKSKVHKTNTEESTESPKHTFKPIPITVPSTGP 401
>U55370-2|AAA97994.1| 561|Caenorhabditis elegans Hypothetical
protein K03B4.6 protein.
Length = 561
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 65 QAIFSLFVFKSGAQVSNIFFLGLSTASGSLGYPSHTTKSPGIASG 199
QA S+F GA+ S+ FFL S A G P+ T++P + G
Sbjct: 9 QAHLSIFNATLGAETSDPFFLNTSAA----GNPTKGTENPPVEGG 49
>Z79694-3|CAB01962.3| 594|Caenorhabditis elegans Hypothetical
protein C15A11.3 protein.
Length = 594
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -3
Query: 480 AVDVRKLDFRIGKIVEISKHPDADSLYVEKIDCGEENP-RTVVSGLVNHVPIDEMRERIV 304
AV++ + +R+ K I PD Y K++C P R +VN + +D R+ I+
Sbjct: 156 AVEMAECSYRVEKQKAIIYSPDYPYYYPSKVNCTYHIPQRKGFQIVVNSIVMDIGRDAIL 215
Query: 303 MV 298
+
Sbjct: 216 QI 217
>Z79598-7|CAB01866.1| 386|Caenorhabditis elegans Hypothetical
protein C44H4.5 protein.
Length = 386
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -3
Query: 186 PGDLVVCEGYPREPEAVLNPKKKIFETCAPDLKTNNEKIACYKGNPII 43
P ++V +G PE VLNP + I + L E KG P+I
Sbjct: 187 PLEIVRIKGLGINPETVLNPTRAIGDLQRTHLFEETEAFKNAKGPPVI 234
>L15313-10|AAP68920.1| 355|Caenorhabditis elegans Hypothetical
protein ZK353.1a protein.
Length = 355
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/53 (24%), Positives = 22/53 (41%)
Frame = -3
Query: 171 VCEGYPREPEAVLNPKKKIFETCAPDLKTNNEKIACYKGNPIIVPGKGPIIAP 13
V EGY +P + E ++K + + +CY + + G P I P
Sbjct: 57 VTEGYEEDPSTNPTARPTFMERSKSEMKLKDNRRSCYMLDALAAGGHHPGILP 109
>L15313-9|AAP68921.1| 357|Caenorhabditis elegans Hypothetical
protein ZK353.1b protein.
Length = 357
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/53 (24%), Positives = 22/53 (41%)
Frame = -3
Query: 171 VCEGYPREPEAVLNPKKKIFETCAPDLKTNNEKIACYKGNPIIVPGKGPIIAP 13
V EGY +P + E ++K + + +CY + + G P I P
Sbjct: 59 VTEGYEEDPSTNPTARPTFMERSKSEMKLKDNRRSCYMLDALAAGGHHPGILP 111
>AY387697-1|AAR26326.1| 594|Caenorhabditis elegans SOL-1 protein.
Length = 594
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -3
Query: 480 AVDVRKLDFRIGKIVEISKHPDADSLYVEKIDCGEENP-RTVVSGLVNHVPIDEMRERIV 304
AV++ + +R+ K I PD Y K++C P R +VN + +D R+ I+
Sbjct: 156 AVEMAECSYRVEKQKAIIYSPDYPYYYPSKVNCTYHIPQRKGFQIVVNSIVMDIGRDAIL 215
Query: 303 MV 298
+
Sbjct: 216 QI 217
>AF145375-1|AAD39814.1| 386|Caenorhabditis elegans TAB1-like
protein TAP-1 protein.
Length = 386
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -3
Query: 186 PGDLVVCEGYPREPEAVLNPKKKIFETCAPDLKTNNEKIACYKGNPII 43
P ++V +G PE VLNP + I + L E KG P+I
Sbjct: 187 PLEIVRIKGLGINPETVLNPTRAIGDLQRTHLFEETEAFKNAKGPPVI 234
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,700,354
Number of Sequences: 27780
Number of extensions: 329969
Number of successful extensions: 977
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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