Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13h08
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.6  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   3.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   4.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   4.8  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   6.4  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           22   6.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   6.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 609 FPAGLFYQVSHTASFRVIFPNPI 677
           FPA  F Q  H+A++R +  N +
Sbjct: 92  FPAAAFRQDVHSAAYRCVASNSV 114


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 609 FPAGLFYQVSHTASFRVIFPNPI 677
           FPA  F Q  H+A++R +  N +
Sbjct: 92  FPAAAFRQDVHSAAYRCVASNSV 114


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 617 CWKQPRLLQLFKIPFVMKNQLSIK 546
           CW + RLL    I  V KN+ +++
Sbjct: 327 CWNENRLLDRRNIEVVAKNKETLQ 350


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 249 MVMCASSAEKVEVLIPP-PDAIPGDLVVCEGYPR 151
           +V C  +   V+    P P+ +  DL+V + YPR
Sbjct: 5   IVFCLMALSIVDAAWKPLPENLKEDLIVYQVYPR 38


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 249 MVMCASSAEKVEVLIPP-PDAIPGDLVVCEGYPR 151
           +V C  +   V+    P P+ +  DL+V + YPR
Sbjct: 5   IVFCLMALSIVDAAWKPLPENLKEDLIVYQVYPR 38


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 98  GAQVSNIFFLGLSTASGSLGYPSHTTKSPGIASGG 202
           G     I  +GLS    S+ Y   +  S G+  GG
Sbjct: 197 GGNPKRITLIGLSAGGASVHYHYLSPLSAGLFQGG 231


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 98  GAQVSNIFFLGLSTASGSLGYPSHTTKSPGIASGG 202
           G     I  +GLS    S+ Y   +  S G+  GG
Sbjct: 68  GGNPKRITLIGLSAGGASVHYHYLSPLSAGLFQGG 102


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 98  GAQVSNIFFLGLSTASGSLGYPSHTTKSPGIASGG 202
           G     I  +GLS    S+ Y   +  S G+  GG
Sbjct: 197 GGNPKRITLIGLSAGGASVHYHYLSPLSAGLFQGG 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,227
Number of Sequences: 438
Number of extensions: 4051
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)