Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13h07
         (296 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   1.0  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    24   4.2  
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    23   7.3  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    23   9.6  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    23   9.6  

>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 128 INVINTYFITTIQTYRTLNCEIAKKSKYF 42
           ++V+  +F   +Q  RT++ +IA+K +YF
Sbjct: 146 VDVLIPFFQRVVQEVRTISRDIAEKLQYF 174


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 175 TDHLMVSGYRRSWTSAMPG 231
           TD   + G+RR++  AMPG
Sbjct: 608 TDVAEIKGHRRTYIGAMPG 626


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 218 EVHERR*PLTIRWSVCSSAY 159
           +VH  R P  I+WS   + Y
Sbjct: 75  DVHNERDPANIKWSASGAEY 94


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -1

Query: 275 QLCXETVARQRLG-SAPGIAEVHERR*PLTIRWSVCSSAYKGNKKK 141
           +LC  +     L  S+P  + +H           VC  +Y+GN+KK
Sbjct: 20  ELCSSSTDITSLSVSSPNESVIHSSHSASEADEYVCKLSYEGNRKK 65


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 149 KKKPLSKINVINTY 108
           K +P SK+N+++TY
Sbjct: 602 KSRPSSKVNLVDTY 615


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,161,714
Number of Sequences: 5004
Number of extensions: 19665
Number of successful extensions: 40
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)