Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13h07
(296 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0979 + 7743243-7744063,7744141-7744324,7745242-7745425,774... 29 0.65
04_03_0918 - 20806627-20806724,20807674-20807962 27 2.0
05_02_0129 - 6897189-6897448,6897581-6898063,6898409-6898604 27 3.5
10_02_0028 + 4331612-4331810,4332588-4333588 26 4.6
10_01_0333 + 3675806-3676001,3676783-3677783 26 4.6
07_03_1461 - 26700613-26700621,26700784-26700851,26701778-267019... 26 4.6
05_02_0131 - 6919143-6920125,6920334-6920529 26 4.6
05_02_0130 - 6906540-6907522,6908542-6908737 26 4.6
05_02_0128 - 6890918-6891900,6892929-6893124 26 4.6
03_02_0741 - 10857656-10857844,10858315-10858848,10859516-108598... 26 4.6
11_06_0606 + 25432471-25432517,25433098-25433173,25433272-254334... 26 6.0
10_08_0459 + 18092656-18092724,18092827-18092886,18092970-180930... 25 8.0
07_03_1756 - 29239137-29239325,29239741-29240259,29240693-292408... 25 8.0
>01_01_0979 +
7743243-7744063,7744141-7744324,7745242-7745425,
7746640-7746746
Length = 431
Score = 29.1 bits (62), Expect = 0.65
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 119 INTYFITTIQTYRTLNCEIAKKSKYF 42
++TY +TT+ T R C+IA ++ Y+
Sbjct: 108 VHTYHVTTMPTQRYFVCDIAARTAYY 133
>04_03_0918 - 20806627-20806724,20807674-20807962
Length = 128
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Frame = +1
Query: 202 RRSW---TSAMPGAEPSRCLATVS---LHNCNGGGG 291
RR W +AM GAEP R A VS N +GGGG
Sbjct: 42 RRRWMAAAAAMEGAEPERPAADVSDGWEQNPSGGGG 77
>05_02_0129 - 6897189-6897448,6897581-6898063,6898409-6898604
Length = 312
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 217 SAMPGAEPSRCLATVSLHNCNGGG 288
+++ G PS +SLH C+GGG
Sbjct: 115 ASLLGLNPSVSCTILSLHGCSGGG 138
>10_02_0028 + 4331612-4331810,4332588-4333588
Length = 399
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 217 SAMPGAEPSRCLATVSLHNCNGGG 288
+++ G PS +SLH C+GGG
Sbjct: 152 ASLLGLRPSVSRTILSLHGCSGGG 175
>10_01_0333 + 3675806-3676001,3676783-3677783
Length = 398
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 217 SAMPGAEPSRCLATVSLHNCNGGG 288
+++ G PS +SLH C+GGG
Sbjct: 151 ASLLGLRPSVSRTILSLHGCSGGG 174
>07_03_1461 -
26700613-26700621,26700784-26700851,26701778-26701919,
26702011-26702318,26702415-26702481,26702543-26702664,
26702763-26702815,26702924-26703006,26703092-26703160,
26703235-26703633
Length = 439
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = +3
Query: 147 FIALVGRRAYGPPDGEWLPSL-----MDFSNARGRAKPLPSDR 260
FIA + R P G P D S A+GR++P+PSD+
Sbjct: 326 FIAAMLARPSNPESGPGRPQPRTKQHQDASPAQGRSQPMPSDK 368
>05_02_0131 - 6919143-6920125,6920334-6920529
Length = 392
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 217 SAMPGAEPSRCLATVSLHNCNGGG 288
+++ G PS +SLH C+GGG
Sbjct: 151 ASLLGLNPSVSRTILSLHGCSGGG 174
>05_02_0130 - 6906540-6907522,6908542-6908737
Length = 392
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 217 SAMPGAEPSRCLATVSLHNCNGGG 288
+++ G PS +SLH C+GGG
Sbjct: 151 ASLLGLNPSVSRTILSLHGCSGGG 174
>05_02_0128 - 6890918-6891900,6892929-6893124
Length = 392
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 217 SAMPGAEPSRCLATVSLHNCNGGG 288
+++ G PS +SLH C+GGG
Sbjct: 151 ASLLGLNPSVSRTILSLHGCSGGG 174
>03_02_0741 -
10857656-10857844,10858315-10858848,10859516-10859824,
10860521-10860622,10861446-10861613,10862734-10862847,
10863003-10863107,10863206-10863336,10863680-10863804,
10863890-10864061,10864411-10864505,10864771-10864841,
10864923-10865009,10865119-10865184,10865401-10865499,
10866631-10866672,10866757-10866822,10866910-10867101,
10867224-10867289,10868473-10868811
Length = 1023
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 175 TDHLMVSGYRRSWTSAMPGAEPSRCLATVSLHN 273
+D + G+RR++ AMPG + +CL +V N
Sbjct: 511 SDIAEIKGHRRTYVGAMPG-KMVQCLKSVGTSN 542
>11_06_0606 +
25432471-25432517,25433098-25433173,25433272-25433448,
25433576-25433653,25433749-25433853,25434042-25434108,
25434219-25434280,25434371-25434510,25434717-25434843,
25434917-25435031,25435220-25435308,25435699-25435782,
25435961-25436737
Length = 647
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 197 PLTIRWSVCSSAYKGNKKKPLSKINVI 117
PL R + A+ GNKK+P K+ V+
Sbjct: 367 PLYYRDKIVLVAFGGNKKEPSDKVEVL 393
>10_08_0459 +
18092656-18092724,18092827-18092886,18092970-18093038,
18093134-18093178,18093706-18094332,18094424-18094597,
18094688-18094991,18095070-18095161,18095253-18095319,
18095407-18095478,18095613-18095830,18095979-18096113,
18096225-18096520,18096603-18096774,18096860-18096958,
18097048-18097179,18097273-18097373,18097460-18097649,
18097713-18097751
Length = 986
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 149 KKKPLSKINVINTYFITTIQTYRTLNCEIAKKSKY 45
KK+PL+ VI ++ I + + N I +KY
Sbjct: 212 KKEPLTNEKVITSFLIVALACFLCPNSSILPSTKY 246
>07_03_1756 -
29239137-29239325,29239741-29240259,29240693-29240800,
29240856-29241155,29241730-29241831,29243042-29243209,
29243878-29243991,29244184-29244288,29244372-29244502,
29244794-29244918,29245001-29245172,29245277-29245316,
29245636-29245722,29245803-29245868,29246412-29246510,
29246714-29246836,29247066-29247107,29247195-29247260,
29247362-29247553,29247672-29247737,29248839-29249141
Length = 1038
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 190 VSGYRRSWTSAMPGAEPSRCLATVSLHN 273
+ G+RR++ AMPG + +CL +V N
Sbjct: 503 IKGHRRTYVGAMPG-KMVQCLKSVGTAN 529
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,352,269
Number of Sequences: 37544
Number of extensions: 144640
Number of successful extensions: 329
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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