Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13h07
         (296 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y08637-1|CAA69927.1|  487|Caenorhabditis elegans nicotinic acety...    27   1.8  
U23525-2|AAK71378.1|  487|Caenorhabditis elegans Acetylcholine r...    27   1.8  
AF016682-6|AAL06054.1|  284|Caenorhabditis elegans Hypothetical ...    27   2.4  
AF043693-4|AAB97538.1|  971|Caenorhabditis elegans Hypothetical ...    27   3.2  
AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical...    26   4.2  

>Y08637-1|CAA69927.1|  487|Caenorhabditis elegans nicotinic
           acetylcholine receptorsubunit ACR-3 protein.
          Length = 487

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 180 PPDGEWLPSLMDFSNARG 233
           PPD  WLP ++ F+NA G
Sbjct: 104 PPDKVWLPDIVLFNNADG 121


>U23525-2|AAK71378.1|  487|Caenorhabditis elegans Acetylcholine
           receptor protein 3 protein.
          Length = 487

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 180 PPDGEWLPSLMDFSNARG 233
           PPD  WLP ++ F+NA G
Sbjct: 104 PPDKVWLPDIVLFNNADG 121


>AF016682-6|AAL06054.1|  284|Caenorhabditis elegans Hypothetical
           protein T07D3.3 protein.
          Length = 284

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 145 FLLPL*ADEHTDHLMVSGYRRS 210
           F++P  +DEHTD+  VSG  RS
Sbjct: 92  FVIPPSSDEHTDYYNVSGSIRS 113


>AF043693-4|AAB97538.1|  971|Caenorhabditis elegans Hypothetical
           protein C34B2.6 protein.
          Length = 971

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 175 TDHLMVSGYRRSWTSAMPGAEPSRCLATVSLHN 273
           TD   + G+RR++  AMPG +  +C+  V   N
Sbjct: 542 TDVAEIKGHRRTYVGAMPG-KMIQCMKKVKTEN 573


>AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical
           protein Y48B6A.11 protein.
          Length = 922

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 241 SRCLATVSLHNCNGGGG 291
           S C  TV  H C+GGGG
Sbjct: 593 SNCHVTVHSHCCSGGGG 609


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,752,182
Number of Sequences: 27780
Number of extensions: 119051
Number of successful extensions: 215
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)