Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13h07
(296 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 25 0.20
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 21 2.4
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 20 5.6
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 20 5.6
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 20 5.6
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 20 7.4
EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein. 19 9.8
EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein. 19 9.8
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 19 9.8
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 19 9.8
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 19 9.8
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 19 9.8
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 25.0 bits (52), Expect = 0.20
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 180 PPDGEWLPSLMDFSNARG 233
PPD W P ++ F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 21.4 bits (43), Expect = 2.4
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = +3
Query: 156 LVGRRAYGPPDGEWLP 203
L+G R PP +W P
Sbjct: 408 LIGSRRTSPPPEDWKP 423
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 20.2 bits (40), Expect = 5.6
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +3
Query: 180 PPDGEWLPSLMDFSNARG 233
P D W P ++ ++NA G
Sbjct: 106 PSDHIWRPDIVLYNNADG 123
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 20.2 bits (40), Expect = 5.6
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +3
Query: 180 PPDGEWLPSLMDFSNARG 233
P D W P ++ ++NA G
Sbjct: 106 PSDHIWRPDIVLYNNADG 123
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 20.2 bits (40), Expect = 5.6
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +3
Query: 180 PPDGEWLPSLMDFSNARG 233
P D W P ++ ++NA G
Sbjct: 102 PSDHIWRPDIVLYNNADG 119
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 19.8 bits (39), Expect = 7.4
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +3
Query: 180 PPDGEWLPSLMDFS 221
PP + LP L+DF+
Sbjct: 3 PPSKQGLPVLVDFN 16
>EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein.
Length = 684
Score = 19.4 bits (38), Expect = 9.8
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +3
Query: 105 EVGINNIYFG*RFFFIALVGRRAYGPPD 188
++G+N YF R F + + Y PD
Sbjct: 226 DIGLNTYYFFLRQAFPFWLPSKEYDLPD 253
>EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein.
Length = 684
Score = 19.4 bits (38), Expect = 9.8
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +3
Query: 105 EVGINNIYFG*RFFFIALVGRRAYGPPD 188
++G+N YF R F + + Y PD
Sbjct: 226 DIGLNTYYFFLRQAFPFWLPSKEYDLPD 253
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 19.4 bits (38), Expect = 9.8
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +1
Query: 259 VSLHNCNGGGG 291
V+L C GGGG
Sbjct: 4 VALGRCAGGGG 14
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 19.4 bits (38), Expect = 9.8
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +1
Query: 259 VSLHNCNGGGG 291
V+L C GGGG
Sbjct: 4 VALGRCAGGGG 14
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 19.4 bits (38), Expect = 9.8
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +1
Query: 259 VSLHNCNGGGG 291
V+L C GGGG
Sbjct: 4 VALGRCAGGGG 14
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 19.4 bits (38), Expect = 9.8
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +1
Query: 259 VSLHNCNGGGG 291
V+L C GGGG
Sbjct: 4 VALGRCAGGGG 14
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,134
Number of Sequences: 438
Number of extensions: 1324
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used: 6119169
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
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