Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13g20
(463 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac... 157 6e-40
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch... 156 1e-39
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 26 2.4
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 4.3
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 7.4
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 25 7.4
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 25 7.4
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 24 9.8
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 24 9.8
>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 144
Score = 157 bits (382), Expect = 6e-40
Identities = 72/135 (53%), Positives = 96/135 (71%)
Frame = -1
Query: 433 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 254
M V+VKDV+ K + AA LK++GK+ P+ +D+VKT KELAPYDPDW+YVR AAI
Sbjct: 1 MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60
Query: 253 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGG 74
RHIY+R VGV + K++GG G+ PSH SGS+ RK +QSLE + ++EK +GG
Sbjct: 61 ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGG 120
Query: 73 RILTTQGRRDLDRIA 29
R ++ QG+RDLDRIA
Sbjct: 121 RRISQQGQRDLDRIA 135
>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 156 bits (379), Expect = 1e-39
Identities = 71/135 (52%), Positives = 96/135 (71%)
Frame = -1
Query: 433 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 254
M V+VKDV+ + + AA LK++GK+ P+ +D+VKT KELAPYDPDW+YVR AAI
Sbjct: 1 MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60
Query: 253 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGG 74
RHIY+R VGV + K++GG G+ PSH SGS+ RK +QSLE + ++EK +GG
Sbjct: 61 ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGG 120
Query: 73 RILTTQGRRDLDRIA 29
R ++ QG+RDLDRIA
Sbjct: 121 RRISQQGQRDLDRIA 135
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 26.2 bits (55), Expect = 2.4
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 194 TEDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQL 304
++D+G +L+ N+ +N+ TK+ S I+ QL
Sbjct: 109 SQDVGQNLEDNQISNIGTTKEASNAPIKTTNFAGVQL 145
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 25.4 bits (53), Expect = 4.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 318 QLASKSWLRMTLIGSMCVVL 259
+L SKSWL + +G +C+ L
Sbjct: 359 KLLSKSWLSLEPVGQICISL 378
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 24.6 bits (51), Expect = 7.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 270 CVVLPSFVIFTFAHLLESRL 211
C+V S V+F AH+ E RL
Sbjct: 176 CIVSSSLVLFDNAHVTEGRL 195
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 24.6 bits (51), Expect = 7.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = +2
Query: 44 VSSTLCGENATT----VLNFLNKLQCLQRLQSLAC 136
VSS C E T L+ +N ++C+ LQS+ C
Sbjct: 261 VSSKNCFEEPITPRFQALHRINMIECIPELQSVVC 295
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 24.6 bits (51), Expect = 7.4
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -2
Query: 258 PSFVIFTFAHLLESRLSPRSSVGANVMELHLHISAGHQAVLHARLCNRW 112
P I TF+ + + + G +V +L+L + + H L +R C +W
Sbjct: 261 PCLYIETFSFPISTINQLFKAHGMSVEQLNLFLKSIHYIGLCSRFCKQW 309
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 24.2 bits (50), Expect = 9.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 415 KDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKE 302
+D E DKI ++V HL K K + + L K KE
Sbjct: 85 EDEEADKIYQSVEEHLSKRRKSQREKQEQLQKEKYEKE 122
>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 24.2 bits (50), Expect = 9.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 233 LTCWSQDCHQDLRWAQT*WSYTFTFLQVIRQY 138
LTCW++D D+ + W +TF+Q I ++
Sbjct: 196 LTCWNRDDKTDMPSSPREW---YTFVQSISKH 224
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,882,453
Number of Sequences: 5004
Number of extensions: 35935
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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