Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13g19
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    29   0.51 
SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.67 
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   2.7  
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    27   2.7  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    26   4.7  
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    26   6.2  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    26   6.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   6.2  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    25   8.2  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   8.2  

>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 30/107 (28%), Positives = 47/107 (43%)
 Frame = -1

Query: 341 AELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDEVLTRDFITKNMAKFKTVALKL 162
           AEL +     + L   FY L N      V+ +L S+Y     RD +          +  L
Sbjct: 24  AELPKPSIRPETLTDRFYGLTNYGNTCYVSSVLVSLYHLKPFRDSLN---------SYPL 74

Query: 161 PVAPSTTEYVPTSISGSKKRKNLSSGQNKRSSIKNRRXTNCGSNTFN 21
           P AP   + V T    +   ++ SS  +K+ S++NR+ +  GSN  N
Sbjct: 75  PSAPPNFKSVCTK---TNHPESSSSRHSKKKSMENRKSSLYGSNGIN 118


>SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 143

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 20/88 (22%), Positives = 39/88 (44%)
 Frame = -1

Query: 521 AMWDLVKNTPELADFVFIFDHTEKMGKKMADRSTSXSSSDNAAIPASKKRQTAVLTNANL 342
           A +D+++   EL +F F   H E + ++   + T+ S S N    AS+     V+     
Sbjct: 16  AYYDVIEPYSELLEFSF---HKEFVSEEKVTQRTASSDSLNTI--ASENNDENVINLEEF 70

Query: 341 AELKESCEMRDKLYSEFYSLLNETFNNN 258
            +LK +C++  +   +   L  +    N
Sbjct: 71  RQLKRNCDLYQRNLQKLQLLFKQQSQKN 98


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = -1

Query: 623  KMSXRKKKVINNNKYILFNS---WYTKIKQPEWPSSPAMWDLVKNTPELADFV 474
            K + +K  V+ N   IL NS   W   IK+P   S P   D   N  +L   +
Sbjct: 923  KSNSKKVTVLRNKLNILNNSLSKWKCLIKKPSDFSEPVSMDFTSNDEQLVQLL 975


>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -1

Query: 188 KFKTVALKLPVAPSTTEYVPTSISGSKKRKNLSSGQNKRSSIKNRRXT 45
           K K    K PV+ ST      + S  K ++  SSG+ K +S K  + T
Sbjct: 227 KSKKKPKKTPVSNSTASQASENASDKKTKEKKSSGKQKIASKKKDQLT 274


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 30/152 (19%), Positives = 55/152 (36%)
 Frame = -1

Query: 509 LVKNTPELADFVFIFDHTEKMGKKMADRSTSXSSSDNAAIPASKKRQTAVLTNANLAELK 330
           L +N  ELA+  F  +   +  K      ++ SSS     PA      +     + +   
Sbjct: 319 LAENLSELAEKSFTIEQNRENEKSSTKNDSTVSSSAVVMAPAGPAMAPSASNKPSASSTT 378

Query: 329 ESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDEVLTRDFITKNMAKFKTVALKLPVAP 150
           +S   + K   +  S+   +F  N+A           T+  +TK            P  P
Sbjct: 379 KSSNSKSK--KKVTSISGTSFFKNLASSTKPTSASSSTKAPLTKQQTN--------PSTP 428

Query: 149 STTEYVPTSISGSKKRKNLSSGQNKRSSIKNR 54
            ++  +   + G +K K+  SG +  +   NR
Sbjct: 429 LSS--IMAGLKGREKEKDKDSGISSENVSNNR 458


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 149 STTEYVPTSISGSKKRKNLSSGQNKRSSIKNRRXT 45
           S++ +VP  +S SKKRK +++  +    I + R T
Sbjct: 71  SSSHFVPNGVSNSKKRKLVATDLDVDFDISSVRVT 105


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -1

Query: 617 SXRKKKVINNNKYILFN-SWYTKIKQPEWP-SSPAMWDLVKNTPEL 486
           S R++ V NNN   +FN S++ KI    +   +  +WD ++N  +L
Sbjct: 232 SLRERFVDNNNSDYIFNVSYHKKIPADGFSLYTREIWDTIENNKDL 277


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 22/78 (28%), Positives = 40/78 (51%)
 Frame = +1

Query: 136 YSVVDGATGNLSATVLNLAIFLVMKSRVNTSS*MLLSRGATLLLNVSFNKL*NSE*SLSR 315
           YSV++ +T   S+TVLN +  +   S +N+S+ +  S        ++ + + NS   ++ 
Sbjct: 591 YSVLNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITS 650

Query: 316 ISQLSFNSAKFALVSTAV 369
            S L  NS+     STA+
Sbjct: 651 SSVL--NSSTPITSSTAL 666


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 42  VSVAAIFYRRSLVLAGTEVFSFLAAANRSGHVFCSRRCNGQLERYRLKFS 191
           ++V  + Y    +L     F F A+ N++   +  R C+   E+ +LKFS
Sbjct: 510 IAVVVVGYPACPLLTSRVRFCFSASHNKADMDYFLRACDEVGEKLQLKFS 559


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = -1

Query: 353 NANLAELKESCEMRDKLYSEFYS--LLNETFNNNVAPLLSSIYDEVLTRDFITKNMAKFK 180
           NA +  +K+S      +   F    ++   FNNN+  L   +     + D + ++++K  
Sbjct: 523 NAQVEIVKKSLSSEFDIRQSFKENWVVKSNFNNNLRKLHEKLQSLFASYDKLQEDLSKRL 582

Query: 179 TVALKLPVAPSTTEYVPTSISGSK 108
                L  +P+   YV   +SG++
Sbjct: 583 GKKATLRKSPAKLYYVHLKLSGNE 606


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,552
Number of Sequences: 5004
Number of extensions: 53217
Number of successful extensions: 225
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)