Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13g19
(719 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE013599-545|AAF59166.2| 922|Drosophila melanogaster CG14766-PA... 32 0.90
AY928610-1|AAX28843.1| 377|Drosophila melanogaster gag protein ... 31 2.1
AJ001516-2|CAC79667.1| 373|Drosophila melanogaster gag protein ... 31 2.1
AE014298-1416|AAF46559.1| 1161|Drosophila melanogaster CG15311-P... 30 3.6
AE014134-11|AAF51568.2| 2833|Drosophila melanogaster CG31973-PB,... 29 4.8
Y14999-1|CAB40628.1| 1408|Drosophila melanogaster Bip2 protein p... 29 8.4
AY069276-1|AAL39421.1| 363|Drosophila melanogaster GM10839p pro... 29 8.4
AJ292191-1|CAC34474.1| 1408|Drosophila melanogaster TAFII155 pro... 29 8.4
AJ251945-1|CAB64265.1| 1406|Drosophila melanogaster BIP2 protein... 29 8.4
AE014135-85|AAF59342.1| 1406|Drosophila melanogaster CG2009-PA p... 29 8.4
>AE013599-545|AAF59166.2| 922|Drosophila melanogaster CG14766-PA
protein.
Length = 922
Score = 31.9 bits (69), Expect = 0.90
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = -1
Query: 389 PASKKRQTAVLTNANLA--ELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDEVLT 216
P S+KR+ +T N + E K LYS + +++ET N +PL Y L
Sbjct: 827 PVSEKRELISITKPNQSDCEAKHRSHKDVNLYSRYPKIISETLENLTSPLRFENYTRELL 886
Query: 215 RDFITKNMAK 186
+ + ++ K
Sbjct: 887 KAYKALDVTK 896
>AY928610-1|AAX28843.1| 377|Drosophila melanogaster gag protein
protein.
Length = 377
Score = 30.7 bits (66), Expect = 2.1
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Frame = -1
Query: 308 KLYSEFYSLL-NETFNNNVAPLLSSIYDEVLTRDFITKNMAKFKT-VALKLPVAPSTTEY 135
K+ S+ +S+L N NN V +Y+EV F+T KT V +K +PST E
Sbjct: 197 KVRSQLFSILKNSEHNNTVVDAKKVVYNEVCLNAFMTGLKEPLKTFVRIK---SPSTLE- 252
Query: 134 VPTSISGSKKRKNLSSGQNKRSSIKNRRXTNCGSNTF 24
+ + + L QNKR++ + + T+
Sbjct: 253 --QAYEQCQIEQTLYRAQNKRTNRPEQGPNGSDNKTY 287
>AJ001516-2|CAC79667.1| 373|Drosophila melanogaster gag protein
protein.
Length = 373
Score = 30.7 bits (66), Expect = 2.1
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Frame = -1
Query: 308 KLYSEFYSLL-NETFNNNVAPLLSSIYDEVLTRDFITKNMAKFKT-VALKLPVAPSTTEY 135
K+ S+ +S+L N NN V +Y+EV F+T KT V +K +PST E
Sbjct: 197 KVRSQLFSILKNSEHNNTVVDAKKVVYNEVCLNAFMTGLKEPLKTFVRIK---SPSTLE- 252
Query: 134 VPTSISGSKKRKNLSSGQNKRSSIKNRRXTNCGSNTF 24
+ + + L QNKR++ + + T+
Sbjct: 253 --QAYEQCQIEQTLYRAQNKRTNRPEQGPNGSDNKTY 287
>AE014298-1416|AAF46559.1| 1161|Drosophila melanogaster CG15311-PA
protein.
Length = 1161
Score = 29.9 bits (64), Expect = 3.6
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -1
Query: 176 VALKLPVAPSTTEYVPTSISGSKKRKNLSSGQNKRSSI 63
+A K PVA STT VPT+++ SK SS +++
Sbjct: 340 LAKKYPVATSTTTKVPTTLATSKTTSRSSSSSTTTTTM 377
>AE014134-11|AAF51568.2| 2833|Drosophila melanogaster CG31973-PB,
isoform B protein.
Length = 2833
Score = 29.5 bits (63), Expect = 4.8
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 119 SGSKKRKNLSSGQNKRSSIKNRRXTNCGSNTF 24
S +KR++LS+ K S KNR +NC S F
Sbjct: 278 SRRRKRRDLSAQPTKVSEEKNRNDSNCSSVVF 309
>Y14999-1|CAB40628.1| 1408|Drosophila melanogaster Bip2 protein
protein.
Length = 1408
Score = 28.7 bits (61), Expect = 8.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 452 KMGKKMADRSTSXSSSDNAAIPASKKRQTAVLTNAN 345
K+ K++ +ST SSS+ A K +QT +L++ N
Sbjct: 1154 KLTLKLSGKSTLFSSSEKEMTDAGKLKQTTILSSEN 1189
>AY069276-1|AAL39421.1| 363|Drosophila melanogaster GM10839p
protein.
Length = 363
Score = 28.7 bits (61), Expect = 8.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 452 KMGKKMADRSTSXSSSDNAAIPASKKRQTAVLTNAN 345
K+ K++ +ST SSS+ A K +QT +L++ N
Sbjct: 111 KLTLKLSGKSTLFSSSEKEMTDAGKLKQTTILSSEN 146
>AJ292191-1|CAC34474.1| 1408|Drosophila melanogaster TAFII155 protein
protein.
Length = 1408
Score = 28.7 bits (61), Expect = 8.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 452 KMGKKMADRSTSXSSSDNAAIPASKKRQTAVLTNAN 345
K+ K++ +ST SSS+ A K +QT +L++ N
Sbjct: 1154 KLTLKLSGKSTLFSSSEKEMTDAGKLKQTTILSSEN 1189
>AJ251945-1|CAB64265.1| 1406|Drosophila melanogaster BIP2 protein
protein.
Length = 1406
Score = 28.7 bits (61), Expect = 8.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 452 KMGKKMADRSTSXSSSDNAAIPASKKRQTAVLTNAN 345
K+ K++ +ST SSS+ A K +QT +L++ N
Sbjct: 1154 KLTLKLSGKSTLFSSSEKEMTDAGKLKQTTILSSEN 1189
>AE014135-85|AAF59342.1| 1406|Drosophila melanogaster CG2009-PA
protein.
Length = 1406
Score = 28.7 bits (61), Expect = 8.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 452 KMGKKMADRSTSXSSSDNAAIPASKKRQTAVLTNAN 345
K+ K++ +ST SSS+ A K +QT +L++ N
Sbjct: 1154 KLTLKLSGKSTLFSSSEKEMTDAGKLKQTTILSSEN 1189
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,987,704
Number of Sequences: 53049
Number of extensions: 569145
Number of successful extensions: 2072
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2072
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3211306956
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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