Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13g19
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical ...    32   0.36 
AY559748-1|AAS72410.1|  671|Caenorhabditis elegans heat shock tr...    31   0.63 
AY559747-1|AAS72409.1|  671|Caenorhabditis elegans heat shock tr...    31   0.63 
AL033536-5|CAA22146.1|  671|Caenorhabditis elegans Hypothetical ...    31   0.63 
AF000196-6|ABC71844.1|  137|Caenorhabditis elegans Hypothetical ...    30   1.4  
AF000196-5|AAC24255.2|  140|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z81107-8|CAB03231.3|  282|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical...    28   5.8  
AF043702-10|AAK21498.1|  130|Caenorhabditis elegans Hypothetical...    28   5.8  
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical...    28   5.8  
U41547-5|AAX88831.1|  272|Caenorhabditis elegans C.elegans homeo...    28   7.7  

>AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical
           protein Y95B8A.7 protein.
          Length = 608

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = -1

Query: 311 DKLYSEFYSLLNE--TFNNNVAPLLSSIYDEV-LTRDFITKNMAKFKTVALKLPVAPSTT 141
           D+  +E Y+ LN    F +NV  L+S I + +    D I +++ K     ++LP   +TT
Sbjct: 260 DRTINEKYAGLNPGVEFISNVDRLISDINESLKYVSDKIERDVRKIPEDVVELPTTTTTT 319

Query: 140 EYVPTSISGSKKRKNLSSG 84
           E  P ++ G  +   ++ G
Sbjct: 320 EQPPRTVLGCSRVGIIAKG 338


>AY559748-1|AAS72410.1|  671|Caenorhabditis elegans heat shock
           transcription factor 1 protein.
          Length = 671

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = -1

Query: 449 MGKKMADRST---SXSSSDNAAIPASKKRQTAVLTNANLAELKESCEMRDKLYSEFYSLL 279
           + K++A R        +++  A P SK+ +     N+     K+ C++ + L  E     
Sbjct: 277 LSKRVAKRGVLEIDFCAANGTAGPNSKRARM----NSEEGPYKDVCDLLESLQRETQEPF 332

Query: 278 NETFNNNVAPLLSSIYDE 225
           +  F NN  PL+S + DE
Sbjct: 333 SRRFTNNEGPLISEVTDE 350


>AY559747-1|AAS72409.1|  671|Caenorhabditis elegans heat shock
           transcription factor 1 protein.
          Length = 671

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = -1

Query: 449 MGKKMADRST---SXSSSDNAAIPASKKRQTAVLTNANLAELKESCEMRDKLYSEFYSLL 279
           + K++A R        +++  A P SK+ +     N+     K+ C++ + L  E     
Sbjct: 277 LSKRVAKRGVLEIDFCAANGTAGPNSKRARM----NSEEGPYKDVCDLLESLQRETQEPF 332

Query: 278 NETFNNNVAPLLSSIYDE 225
           +  F NN  PL+S + DE
Sbjct: 333 SRRFTNNEGPLISEVTDE 350


>AL033536-5|CAA22146.1|  671|Caenorhabditis elegans Hypothetical
           protein Y53C10A.12 protein.
          Length = 671

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = -1

Query: 449 MGKKMADRST---SXSSSDNAAIPASKKRQTAVLTNANLAELKESCEMRDKLYSEFYSLL 279
           + K++A R        +++  A P SK+ +     N+     K+ C++ + L  E     
Sbjct: 277 LSKRVAKRGVLEIDFCAANGTAGPNSKRARM----NSEEGPYKDVCDLLESLQRETQEPF 332

Query: 278 NETFNNNVAPLLSSIYDE 225
           +  F NN  PL+S + DE
Sbjct: 333 SRRFTNNEGPLISEVTDE 350


>AF000196-6|ABC71844.1|  137|Caenorhabditis elegans Hypothetical
           protein B0041.6b protein.
          Length = 137

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/74 (27%), Positives = 40/74 (54%)
 Frame = -1

Query: 563 WYTKIKQPEWPSSPAMWDLVKNTPELADFVFIFDHTEKMGKKMADRSTSXSSSDNAAIPA 384
           W  K++    P+S  ++DL K   E++  +   DH   + K +    T+ S+S+N AI  
Sbjct: 47  WKVKLRGEVDPTSGMVYDLAKLKKEMSLVLDTVDH-RNLDKDVEFFKTTVSTSENVAIYM 105

Query: 383 SKKRQTAVLTNANL 342
            +K + +V++N ++
Sbjct: 106 FEKLK-SVMSNPSV 118


>AF000196-5|AAC24255.2|  140|Caenorhabditis elegans Hypothetical
           protein B0041.6a protein.
          Length = 140

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/74 (27%), Positives = 40/74 (54%)
 Frame = -1

Query: 563 WYTKIKQPEWPSSPAMWDLVKNTPELADFVFIFDHTEKMGKKMADRSTSXSSSDNAAIPA 384
           W  K++    P+S  ++DL K   E++  +   DH   + K +    T+ S+S+N AI  
Sbjct: 50  WKVKLRGEVDPTSGMVYDLAKLKKEMSLVLDTVDH-RNLDKDVEFFKTTVSTSENVAIYM 108

Query: 383 SKKRQTAVLTNANL 342
            +K + +V++N ++
Sbjct: 109 FEKLK-SVMSNPSV 121


>Z81107-8|CAB03231.3|  282|Caenorhabditis elegans Hypothetical
           protein R07H5.9 protein.
          Length = 282

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = -1

Query: 206 ITKNMAKFKTVALKLPVAPSTTEYVPTSISGSKKRKNLSSGQNKRSSIKNRRXTNCGSNT 27
           ++++ +   T +   P + +  +  PT    SKK    S   ++ S + +R+  N GS  
Sbjct: 139 VSESRSSSVTASSSAPTSTTCYDSEPTKSDTSKKSSKKSRKSSRSSKVPHRKFKNVGSLD 198

Query: 26  FNG 18
            NG
Sbjct: 199 ENG 201


>AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical
           protein Y105E8B.7 protein.
          Length = 269

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +2

Query: 275 RLTSCKTPNKAYRAFRSSLLILPNLRW*APQSVFFCSLELLRCRLKTTMSIGR 433
           RL  C   +  Y+A    LL LP+ +    Q+    S +L RC   T M IGR
Sbjct: 211 RLNECTDSHVIYKA-SEYLLTLPDTK--LSQTTLKLSFDLSRCDSTTLMDIGR 260


>AF043702-10|AAK21498.1|  130|Caenorhabditis elegans Hypothetical
           protein W03D8.3 protein.
          Length = 130

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 161 PVAPSTTEYVPTSISGSKKRKNLSSGQNKRSSIKNRRXTNCGSNT 27
           PV+ +    V  +  GSK + N SSG N +   K R   + GS +
Sbjct: 46  PVSVAKKFEVQPAQKGSKSKSNQSSGDNSKDKKKKRTKRSGGSKS 90


>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
            protein Y47G6A.17 protein.
          Length = 1736

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -3

Query: 423  DIVVFKRQRSNSSEQKKTDCGAYQRKFGRIKRELRNAR*ALFGVLQLVKRDIQ 265
            ++  F+R   NS E++ TD      +     R LRNA   +   L  +K+ ++
Sbjct: 1345 ELSTFRRNNENSDERRMTDLRVELDRLRTTNRTLRNANEEMKNELSRLKQTVE 1397


>U41547-5|AAX88831.1|  272|Caenorhabditis elegans C.elegans homeobox
           protein 60 protein.
          Length = 272

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = -1

Query: 659 SST*CLVMQXERKMSXRKKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVK 501
           ++T  LV++ E +   RK++  + N   +  +W+   +Q  +PS     +L K
Sbjct: 125 AATKILVLRREIEQQGRKRRNFDKNTTDILQNWFHDHRQNPYPSDQEKAELAK 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,227,192
Number of Sequences: 27780
Number of extensions: 305783
Number of successful extensions: 1017
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)