Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13g18
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    27   2.1  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    27   2.8  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    26   6.5  

>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 215 KILVLLTYLFVKIFDEQYQNSTINYVENAI 126
           K+L+ L  L VK+ +  Y+NS+   +EN I
Sbjct: 655 KLLIQLGLLSVKVKNGDYENSSFETIENLI 684


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 311 HNLHLQPSELYFFKWLFL 364
           H  H  P   Y+FKWLFL
Sbjct: 214 HVYHKAPFTFYWFKWLFL 231


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 695 ISRNPTYMVEHYNYTIRNLSIYTYT 621
           I R+ T+ +E  + TI+NL+  TYT
Sbjct: 298 IVRSDTHQIEFVDPTIKNLTSLTYT 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,899,424
Number of Sequences: 5004
Number of extensions: 57594
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)