Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13g18
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0110 + 11210174-11210292,11211635-11211752,11212426-112125...    30   2.2  
11_01_0477 - 3688357-3690042                                           28   6.8  
05_03_0657 + 16694833-16694963,16695567-16695684,16696280-166963...    28   9.0  

>01_02_0110 +
           11210174-11210292,11211635-11211752,11212426-11212522,
           11212991-11213080,11213174-11213280,11213765-11213887,
           11214055-11214208,11214582-11214642,11214748-11215103,
           11216535-11218056,11218169-11218415
          Length = 997

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 698 RISRNPTYMVEHYNYTIRNLSIYTYTLFD*IC 603
           R+ R   Y  E   Y  RNL++Y Y L D IC
Sbjct: 59  RVCREGEYYEEMMKYLRRNLALYPYHLADYIC 90


>11_01_0477 - 3688357-3690042
          Length = 561

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 217 LKSWYYLLICL*KYLMSNTKIVQLIMLKMQYGYVF 113
           ++SWY +L    K LMS  ++ +   L++ YGY +
Sbjct: 394 MQSWYIMLDTSSKTLMSVCRLDESSSLQLSYGYAY 428


>05_03_0657 +
           16694833-16694963,16695567-16695684,16696280-16696376,
           16700126-16700232,16700473-16700595,16700791-16700944,
           16701237-16701297,16701417-16701781,16701875-16703483,
           16703697-16703940
          Length = 1002

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 698 RISRNPTYMVEHYNYTIRNLSIYTYTLFD*ICALI 594
           +I +   Y  E   Y  RNL++Y Y L D IC ++
Sbjct: 63  KICKEGEYYEELMRYLRRNLALYPYHLADHICRVM 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,339,546
Number of Sequences: 37544
Number of extensions: 286762
Number of successful extensions: 472
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)